RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA983838" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA983838 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7343272 7343272 PRJNA983838_P_NODE_62626_length_360_cov_1.087108_g60259_i0 PRJNA983838 62626 360 1.087108 3.9135888 Luteolibacter luteus 2728835 Bacteria Bacteria 654 0   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g60259 i0 99.444 194.488888888889 360 2 100 0 1 360 3804234 3803875 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 70016 654 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
7649378 7649378 PRJNA983838_P_NODE_118326_length_242_cov_1.597633_g115959_i0 PRJNA983838 118326 242 1.597633 3.86627186 Planctomycetia 203683 Bacteria Bacteria 387 5.26e-103   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g115959 i0 95.473 223.268595041322 243 9 100 2 1 242 122392 122633 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 54031 387 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
10200119 10200119 PRJNA983838_P_NODE_98368_length_262_cov_2.523810_g96001_i0 PRJNA983838 98368 262 2.52381 6.6123822 Verrucomicrobiaceae 203557 Bacteria Bacteria 481 2.57e-131   NTclustered gi|1969670428|gb|MW553372.1| 670166 g96001 i0 100 100.797709923664 260 0 99 0 1 260 168 427 Uncultured Haloferula sp. clone 49 16S ribosomal RNA gene, partial sequence blastn 26409 484 0.993801652892562 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula uncultured Haloferula sp.
17542738 17542738 PRJNA983838_P_NODE_119474_length_241_cov_2.315476_g117107_i0 PRJNA983838 119474 241 2.315476 5.58029716 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 418 1.8599999999999995e-112   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g117107 i0 97.925 289.141078838174 241 5 100 0 1 241 1320153 1319913 Luteolibacter sp. Populi chromosome, complete genome blastn 69683 418 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
17543419 17543419 PRJNA983838_P_NODE_66254_length_344_cov_3.324723_g63887_i0 PRJNA983838 66254 344 3.324723 11.43704712 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 387 7.849999999999998e-103   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g63887 i0 87.834 162.607558139535 337 32 96 7 1 329 7050921 7050586 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 55937 387 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
17543719 17543719 PRJNA983838_P_NODE_84054_length_290_cov_1.437788_g81687_i0 PRJNA983838 84054 290 1.437788 4.1695852 Nibricoccus aquaticus 2576891 Bacteria Bacteria 353 6.57e-93   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g81687 i0 88.66 1.00344827586207 291 31 100 2 1 290 722518 722807 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 291 353 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
22643188 22643188 PRJNA983838_P_NODE_97638_length_264_cov_1.188482_g95271_i0 PRJNA983838 97638 264 1.188482 3.13759248 Akkermansia muciniphila 239935 Bacteria Bacteria 477 3.359999999999999e-130   NTclustered gi|1554474302|gb|CP025823.1| 239935 g95271 i0 99.242 91.9810606060606 264 2 100 0 1 264 785200 784937 Akkermansia muciniphila strain EB-AMDK-7 chromosome, complete genome blastn 24283 477 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;