RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA982720" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA982720 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5099624 5099624 PRJNA982720_S_NODE_4104_length_320_cov_5.696356_g4076_i0 PRJNA982720 4104 320 5.696356 18.2283392 Cutibacterium 1912216 Bacteria Bacteria 592 1.4299999999999996e-164   NTclustered gi|1446500593|gb|CP031442.1| 1747 g4076 i0 100 266.89375 320 0 100 0 1 320 55496 55815 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 85406 592 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
14992149 14992149 PRJNA982720_S_NODE_1572_length_395_cov_3.043478_g1544_i0 PRJNA982720 1572 395 3.043478 12.0217381 Lawsonella clevelandensis 1528099 Bacteria Bacteria 680 0   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g1544 i0 97.727 267.136708860759 396 8 100 1 1 395 553620 553225 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 105519 680 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;