RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA982106" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA982106 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4791902 4791902 PRJNA982106_P_NODE_23004_length_249_cov_0.875000_g22764_i0 PRJNA982106 23004 249 0.875 2.17875 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 76.8 1.34e-9   NTclustered gi|2199271117|dbj|AP025592.1| 2918171 g22764 i0 94 1.82730923694779 50 3 20 0 198 247 305069 305020 Anaeromyxobacter paludicola DNA, complete genome blastn 455 76.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
22640964 22640964 PRJNA982106_P_NODE_25638_length_247_cov_0.885057_g25398_i0 PRJNA982106 25638 247 0.885057 2.18609079 Anaeromyxobacter sp. Fw109-5 404589 Bacteria Bacteria 165 2.75e-36   NTclustered gi|152026452|gb|CP000769.1| 404589 g25398 i0 80.822 32.6194331983806 219 35 87 6 33 246 3109351 3109135 Anaeromyxobacter sp. Fw109-5, complete genome blastn 8057 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
24222737 24222737 PRJNA982106_P_NODE_27019_length_246_cov_0.890173_g26779_i0 PRJNA982106 27019 246 0.890173 2.18982558 Archangium 47 Bacteria Bacteria 327 3.3e-85   NTclustered gi|2809295724|gb|CP102578.1| 48 g26779 i0 90.65 90.8455284552846 246 23 100 0 1 246 2063431 2063676 Archangium gephyra strain SDU49 chromosome, complete genome blastn 22348 327 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;