RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA982106" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA982106 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11474740 11474740 PRJNA982106_P_NODE_21369_length_250_cov_17.819209_g21129_i0 PRJNA982106 21369 250 17.819209 44.5480225 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 457 4.1099999999999985e-124   NTclustered gi|2756222524|gb|PQ001538.1| 5875 g21129 i0 99.602 100.4 251 0 100 1 1 250 133 383 Theileria parva isolate 3_249 small subunit ribosomal RNA gene, partial sequence blastn 25100 457 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria parva
25190101 25190101 PRJNA982106_P_NODE_26200_length_246_cov_0.890173_g25960_i0 PRJNA982106 26200 246 0.890173 2.18982558 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|916507840|ref|XM_013498750.1| 44415 g25960 i0 100 0.117886178861789 29 0 12 0 99 127 933 961 Eimeria mitis uncharacterized protein (EMH_0009750), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;