RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA982106" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA982106 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4791882 4791882 PRJNA982106_P_NODE_21864_length_250_cov_0.870056_g21624_i0 PRJNA982106 21864 250 0.870056 2.17514 Pyramidobacter piscolens 638849 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2188906985|dbj|AP025585.1| 638849 g21624 i0 100 2 250 0 100 0 1 250 1130140 1129891 Pyramidobacter piscolens CE91-St28 DNA, complete genome blastn 500 462 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
9891840 9891840 PRJNA982106_P_NODE_18448_length_263_cov_0.757895_g18208_i0 PRJNA982106 18448 263 0.757895 1.99326385 Fretibacterium fastidiosum 651822 Bacteria Bacteria 403 5.75e-108   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g18208 i0 94.297 353.026615969582 263 15 100 0 1 263 69188 68926 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 92846 403 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
9892090 9892090 PRJNA982106_P_NODE_30448_length_243_cov_0.905882_g30208_i0 PRJNA982106 30448 243 0.905882 2.20129326 Pyramidobacter piscolens 638849 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2188906985|dbj|AP025585.1| 638849 g30208 i0 100 2 243 0 100 0 1 243 2433152 2432910 Pyramidobacter piscolens CE91-St28 DNA, complete genome blastn 486 449 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
17848686 17848686 PRJNA982106_P_NODE_25514_length_247_cov_0.885057_g25274_i0 PRJNA982106 25514 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g25274 i0 100 68.914979757085 247 0 100 0 1 247 1842 1596 Thermus aquaticus DNA polymerase (PolI) gene blastn 17022 457 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
25497354 25497354 PRJNA982106_P_NODE_13940_length_291_cov_1.844037_g13700_i0 PRJNA982106 13940 291 1.844037 5.36614767 Pseudothermotoga 1643951 Bacteria Bacteria 527 3.67e-145   NTclustered gi|157313474|gb|CP000812.1| 416591 g13700 i0 99.313 2 291 2 100 0 1 291 1693789 1693499 Pseudothermotoga lettingae TMO chromosome, complete genome blastn 582 527 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga lettingae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;