RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA981359" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA981359 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2237792 2237792 PRJNA981359_S_NODE_38642_length_305_cov_3.448276_g38542_i0 PRJNA981359 38642 305 3.448276 10.5172418 Corynebacterium appendicis 163202 Bacteria Bacteria 521 1.8e-143   NTclustered gi|2531255973|gb|CP046976.1| 1161099 g38542 i0 97.394 444.445901639344 307 6 100 1 1 305 586782 587088 Corynebacterium appendicis CIP 107643 chromosome, complete genome blastn 135556 521 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium appendicis
2237973 2237973 PRJNA981359_S_NODE_45342_length_290_cov_3.073733_g45242_i0 PRJNA981359 45342 290 3.073733 8.9138257 Lawsonella clevelandensis 1528099 Bacteria Bacteria 496 1.03e-135   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g45242 i0 97.578 225.3 289 7 99 0 2 290 553543 553255 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 65337 496 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
2238285 2238285 PRJNA981359_S_NODE_57682_length_265_cov_2.880208_g57582_i0 PRJNA981359 57682 265 2.880208 7.6325512 Lawsonella clevelandensis 1528099 Bacteria Bacteria 473 4.3599999999999987e-129   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g57582 i0 98.868 290.192452830189 265 3 100 0 1 265 553567 553303 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 76901 473 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
5099127 5099127 PRJNA981359_S_NODE_40324_length_301_cov_7.833333_g40224_i0 PRJNA981359 40324 301 7.833333 23.57833233 Cutibacterium 1912216 Bacteria Bacteria 556 4.87e-154   NTclustered gi|1446500593|gb|CP031442.1| 1747 g40224 i0 100 263.461794019934 301 0 100 0 1 301 55805 55505 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 79302 556 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
11474511 11474511 PRJNA981359_S_NODE_2549_length_605_cov_2.646617_g2454_i0 PRJNA981359 2549 605 2.646617 16.01203285 Corynebacterium 1716 Bacteria Bacteria 861 0   NTclustered gi|2547417233|gb|CP073096.1| 38304 g2454 i0 92.422 372.333884297521 607 41 100 5 1 605 789191 789794 Corynebacterium tuberculostearicum strain CTNIH20 chromosome, complete genome blastn 225262 861 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
11474563 11474563 PRJNA981359_S_NODE_73929_length_240_cov_2.335329_g73829_i0 PRJNA981359 73929 240 2.335329 5.6047896 Propionibacteriaceae 31957 Bacteria Bacteria 383 6.74e-102   NTclustered gi|1086063565|emb|LT629799.1| 546874 g73829 i0 95.798 317.170833333333 238 9 99 1 1 238 1044511 1044747 Friedmanniella sagamiharensis strain DSM 21743 genome assembly, chromosome: I blastn 76121 385 0.994805194805195 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sagamiharensis
14990076 14990076 PRJNA981359_S_NODE_27672_length_334_cov_2.747126_g27572_i0 PRJNA981359 27672 334 2.747126 9.17540084 Corynebacterium marquesiae 2913503 Bacteria Bacteria 584 2.509999999999999e-162   NTclustered gi|2869822234|gb|CP175776.1| 2913503 g27572 i0 98.209 374.236526946108 335 5 100 1 1 334 1954902 1954568 Corynebacterium marquesiae strain YSMAA3_1_G3 chromosome, complete genome blastn 124995 584 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium marquesiae
17539959 17539959 PRJNA981359_S_NODE_24634_length_343_cov_4.444444_g24534_i0 PRJNA981359 24634 343 4.444444 15.24444292 Corynebacterium accolens 38284 Bacteria Bacteria 634 2.5299999999999996e-177   NTclustered gi|2550468567|gb|CP100375.1| 38284 g24534 i0 100 349.166180758018 343 0 100 0 1 343 2492486 2492828 Corynebacterium accolens strain CA8 chromosome blastn 119764 634 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens
17848463 17848463 PRJNA981359_S_NODE_76054_length_230_cov_2.484076_g75954_i0 PRJNA981359 76054 230 2.484076 5.7133748 Cutibacterium 1912216 Bacteria Bacteria 425 1.05e-114   NTclustered gi|1446500593|gb|CP031442.1| 1747 g75954 i0 100 267.947826086957 230 0 100 0 1 230 56237 56466 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 61628 425 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
21364450 21364450 PRJNA981359_S_NODE_33737_length_317_cov_3.655738_g33637_i0 PRJNA981359 33737 317 3.655738 11.58868946 Corynebacterium coyleae 53374 Bacteria Bacteria 468 2.49e-127   NTclustered gi|2058472593|gb|CP077302.1| 53374 g33637 i0 93.375 357.350157728707 317 20 99 1 2 317 501790 501474 Corynebacterium coyleae strain FDAARGOS 1425 chromosome, complete genome blastn 113280 468 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium coyleae
22948553 22948553 PRJNA981359_S_NODE_29278_length_329_cov_3.687500_g29178_i0 PRJNA981359 29278 329 3.6875 12.131875 Micrococcales 85006 Bacteria Bacteria 608 1.4599999999999995e-169   NTclustered gi|2528150176|gb|CP128474.1| 33883 g29178 i0 100 170.987841945289 329 0 100 0 1 329 2056468 2056140 Microbacterium arborescens strain SSF12 chromosome, complete genome blastn 56255 608 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium arborescens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;