RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980839 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
960677 960677 PRJNA980839_P_NODE_97241_length_369_cov_1.209459_g93457_i0 PRJNA980839 97241 369 1.209459 4.46290371 Desulfuromonas thiophila 57664 Bacteria Bacteria 228 5.429999999999998e-55   NTclustered gi|2621701248|emb|OY759968.1| 57664 g93457 i0 92.949 2.18157181571816 156 11 42 0 214 369 2352168 2352323 MAG: Desulfuromonas thiophila isolate 5d13b52e-9f0b-4035-9b75-2cca1ad4870f genome assembly, chromosome: 1 blastn 805 228 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas thiophila
2232530 2232530 PRJNA980839_P_NODE_137402_length_300_cov_2.365639_g133618_i0 PRJNA980839 137402 300 2.365639 7.096917 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 366 8.77e-97   NTclustered gi|2621701823|emb|OY759353.1| 3065857 g133618 i0 88.889 4.95666666666667 297 33 99 0 1 297 4680476 4680772 MAG: Geopsychrobacteraceae bacterium isolate b20cad9c-d1d2-40c5-8f7b-178437520c26 genome assembly, chromosome: 1 blastn 1487 366 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium
13711577 13711577 PRJNA980839_P_NODE_175251_length_266_cov_1.663212_g171467_i0 PRJNA980839 175251 266 1.663212 4.42414392 Geobacter sulfurreducens 35554 Bacteria Bacteria 464 2.64e-126   NTclustered gi|2045533567|gb|CP074693.1| 35554 g171467 i0 98.12 52.2406015037594 266 5 100 0 1 266 81541 81276 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 13896 464 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
22635992 22635992 PRJNA980839_P_NODE_226118_length_244_cov_0.900585_g222334_i0 PRJNA980839 226118 244 0.900585 2.1974274 Geotalea uraniireducens 351604 Bacteria Bacteria 54.7 0.006   NTclustered gi|146395585|gb|CP000698.1| 351605 g222334 i0 88.636 0.180327868852459 44 5 18 0 189 232 5010308 5010351 Geobacter uraniireducens Rf4, complete genome blastn 44 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
25182601 25182601 PRJNA980839_P_NODE_101980_length_358_cov_1.350877_g98196_i0 PRJNA980839 101980 358 1.350877 4.83613966 Desulfovibrio piger 901 Bacteria Bacteria 246 1.45e-60   NTclustered gi|2548467271|emb|OX636706.1| 901 g98196 i0 86.818 0.826815642458101 220 29 61 0 1 220 1791567 1791348 Desulfovibrio piger isolate DSM32187 genome assembly, chromosome: 1 blastn 296 246 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;