RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980839 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9887249 9887249 PRJNA980839_P_NODE_237508_length_241_cov_0.916667_g233724_i0 PRJNA980839 237508 241 0.916667 2.20916747 Salinibacter ruber 146919 Bacteria Bacteria 440 3.959999999999999e-119   NTclustered gi|1241298903|gb|CP020719.1| 146919 g233724 i0 99.585 16.7842323651452 241 1 100 0 1 241 975126 975366 Salinibacter ruber strain ST67 genome blastn 4045 440 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
20085110 20085110 PRJNA980839_P_NODE_210116_length_248_cov_0.880000_g206332_i0 PRJNA980839 210116 248 0.88 2.1824 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 89.8 1.71e-13   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g206332 i0 91.045 1.43548387096774 67 4 27 2 1 66 2107907 2107842 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 356 89.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
25496666 25496666 PRJNA980839_P_NODE_206700_length_249_cov_0.875000_g202916_i0 PRJNA980839 206700 249 0.875 2.17875 Salinibacter 146918 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|1419235469|gb|CP030716.1| 146919 g202916 i0 99.197 13.6907630522088 249 2 100 0 1 249 805055 804807 Salinibacter ruber strain P13 chromosome, complete genome blastn 3409 449 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;