RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980839 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6062531 6062531 PRJNA980839_P_NODE_241165_length_237_cov_42.628049_g237381_i0 PRJNA980839 241165 237 42.628049 101.02847613 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 407 3.94e-109   NTclustered gi|56757963|gb|AY815390.1| 6182 g237381 i0 97.89 125.130801687764 237 2 100 2 1 237 1757 1990 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 29656 407 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
8611235 8611235 PRJNA980839_P_NODE_195147_length_252_cov_1.720670_g191363_i0 PRJNA980839 195147 252 1.72067 4.3360884 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 65.8 2.94e-6   NTclustered gi|376342006|gb|JN837710.1| 79327 g191363 i0 91.667 0.436507936507937 48 2 19 2 49 95 233 187 Schmidtea mediterranea hunchback-like mRNA, complete sequence blastn 110 65.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
14988541 14988541 PRJNA980839_P_NODE_96932_length_369_cov_2.969595_g93148_i0 PRJNA980839 96932 369 2.969595 10.95780555 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 390 6.54e-104   NTclustered gi|60698656|gb|AY915745.1| 6182 g93148 i0 99.533 9.56910569105691 214 1 58 0 156 369 467 254 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 3531 390 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16261240 16261240 PRJNA980839_P_NODE_195933_length_251_cov_11.213483_g192149_i0 PRJNA980839 195933 251 11.213483 28.14584233 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 448 2.48e-121   NTclustered gi|60698688|gb|AY915747.1| 6182 g192149 i0 98.805 2.33067729083665 251 3 100 0 1 251 377 127 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 585 448 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;