RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980839 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2233153 2233153 PRJNA980839_P_NODE_168722_length_271_cov_1.994949_g164938_i0 PRJNA980839 168722 271 1.994949 5.40631179 Thermodesulfovibrionales bacterium 2814272 Bacteria Bacteria 339 1.7e-88   NTclustered gi|2874253970|emb|OY970295.1| 2814272 g164938 i0 90.038 103.476014760148 261 26 97 0 8 268 2904762 2905022 MAG: Thermodesulfovibrionales bacterium isolate MFD01299.bin.c.3 genome assembly, chromosome: 1 blastn 28042 339 1 Bacteria   Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales     Thermodesulfovibrionales bacterium
6060736 6060736 PRJNA980839_P_NODE_150245_length_287_cov_1.186916_g146461_i0 PRJNA980839 150245 287 1.186916 3.40644892 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 525 1.2999999999999995e-144   NTclustered gi|2449737786|gb|CP114557.1| 2927580 g146461 i0 99.652 4 287 1 100 0 1 287 21302 21588 MAG: Candidatus Manganitrophus sp. isolate GAC2 plasmid unnamed2, complete sequence blastn 1148 525 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
6062210 6062210 PRJNA980839_P_NODE_224245_length_244_cov_1.631579_g220461_i0 PRJNA980839 224245 244 1.631579 3.98105276 Nitrospira defluvii 330214 Bacteria Bacteria 394 3.17e-105   NTclustered gi|300603458|emb|FP929003.1| 330214 g220461 i0 95.885 83.1147540983606 243 10 99 0 1 243 76040 76282 Candidatus Nitrospira defluvii chromosome, complete genome blastn 20280 394 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
23911578 23911578 PRJNA980839_P_NODE_230139_length_243_cov_0.905882_g226355_i0 PRJNA980839 230139 243 0.905882 2.20129326 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 388 1.47e-103   NTclustered gi|2874254047|emb|OY970371.1| 2932367 g226355 i0 95.492 1.00411522633745 244 9 100 2 1 243 613953 613711 MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 blastn 244 388 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;