RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980839 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4786800 4786800 PRJNA980839_P_NODE_210784_length_248_cov_0.880000_g207000_i0 PRJNA980839 210784 248 0.88 2.1824 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 152 2.15e-32   NTclustered gi|2874254163|emb|OY970395.1| 412054 g207000 i0 82.941 0.685483870967742 170 27 68 2 75 243 3177194 3177362 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 170 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7335563 7335563 PRJNA980839_P_NODE_166586_length_273_cov_1.505000_g162802_i0 PRJNA980839 166586 273 1.505 4.10865 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 169 2.3899999999999997e-37   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g162802 i0 79.051 0.926739926739927 253 47 92 4 1 250 2437878 2438127 Gemmatimonas phototrophica strain AP64, complete genome blastn 253 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
12437917 12437917 PRJNA980839_P_NODE_219110_length_246_cov_0.890173_g215326_i0 PRJNA980839 219110 246 0.890173 2.18982558 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 115 2.79e-21   NTclustered gi|575456455|gb|CP007128.1| 861299 g215326 i0 77.103 6.55691056910569 214 39 85 10 6 214 1380818 1381026 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 1613 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12438295 12438295 PRJNA980839_P_NODE_238930_length_241_cov_0.916667_g235146_i0 PRJNA980839 238930 241 0.916667 2.20916747 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 193 1.23e-44   NTclustered gi|2874253938|emb|OY970263.1| 412054 g235146 i0 81.78 1.63900414937759 236 37 97 5 1 233 385178 384946 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 395 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14987364 14987364 PRJNA980839_P_NODE_34132_length_842_cov_2.163849_g30710_i0 PRJNA980839 34132 842 2.163849 18.21960858 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 263 3.6000000000000002e-65   NTclustered gi|226088597|dbj|AP009153.1| 379066 g30710 i0 81.424 5.47149643705463 323 59 38 1 13 334 101686 102008 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 4607 263 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;