RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA980839 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8610671 8610671 PRJNA980839_P_NODE_167247_length_272_cov_2.452261_g163463_i0 PRJNA980839 167247 272 2.452261 6.67014992 Acytostelium leptosomum 133408 Evosea other_Eukaryota 492 1.24e-134   NTclustered gi|1057487862|gb|KX539491.1| 133408 g163463 i0 99.265 99.1985294117647 272 2 100 0 1 272 1790 2061 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 26982 492 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
8613191 8613191 PRJNA980839_P_NODE_76987_length_433_cov_2.700000_g73203_i0 PRJNA980839 76987 433 2.7 11.691 Acytostelium leptosomum 133408 Evosea other_Eukaryota 745 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g73203 i0 97.691 2.40184757505774 433 10 100 0 1 433 3281 3713 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 1040 745 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
11159842 11159842 PRJNA980839_P_NODE_101229_length_359_cov_3.062937_g97445_i0 PRJNA980839 101229 359 3.062937 10.99594383 Acytostelium leptosomum 133408 Evosea other_Eukaryota 619 7.429999999999999e-173   NTclustered gi|1057487862|gb|KX539491.1| 133408 g97445 i0 97.772 99.9637883008357 359 8 100 0 1 359 1386 1744 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 35887 619 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
18812264 18812264 PRJNA980839_P_NODE_87935_length_394_cov_2.267913_g84151_i0 PRJNA980839 87935 394 2.267913 8.93557722 Acytostelium leptosomum 133408 Evosea other_Eukaryota 667 0   NTclustered gi|1057487862|gb|KX539491.1| 133408 g84151 i0 97.208 97.4720812182741 394 11 100 0 1 394 2847 2454 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 38404 667 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
20084185 20084185 PRJNA980839_P_NODE_162636_length_276_cov_1.733990_g158852_i0 PRJNA980839 162636 276 1.73399 4.7858124 Acytostelium leptosomum 133408 Evosea other_Eukaryota 488 1.6299999999999995e-133   NTclustered gi|1057487862|gb|KX539491.1| 133408 g158852 i0 98.551 105.836956521739 276 4 100 0 1 276 409 684 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 29211 488 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;