RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 7 ✖

bioproject 1

  • PRJNA980839 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1270597 1270597 PRJNA980839_P_NODE_61241_length_514_cov_6.192744_g57464_i0 PRJNA980839 61241 514 6.192744 31.83070416 Dependoparvovirus 10803 Viruses Viruses 922 0   NTclustered gi|46487804|gb|AY530579.1| 235455 g57464 i0 100 38.6809338521401 499 0 97 0 13 511 1311 1809 Adeno-associated virus 9 isolate hu.14 capsid protein VP1 (cap) gene, complete cds blastn 19882 922 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Dependoparvovirus Dependoparvovirus primate1
6060741 6060741 PRJNA980839_P_NODE_150785_length_286_cov_1.967136_g147001_i0 PRJNA980839 150785 286 1.967136 5.62600896 Betapapillomavirus 1 337051 Viruses Viruses 320 6.56e-83   NTclustered gi|9627145|ref|NC_001531.1| 333923 g147001 i0 100 34.2377622377622 173 0 60 0 1 173 2895 2723 Human papillomoavirus type 5, complete genome blastn 9792 320 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
8923182 8923182 PRJNA980839_P_NODE_226627_length_244_cov_0.900585_g222843_i0 PRJNA980839 226627 244 0.900585 2.1974274 Gammapapillomavirus 325455 Viruses Viruses 435 1.87e-117   NTclustered gi|1559669497|gb|MH777336.2| 10566 g222843 i0 98.77 2 244 3 100 0 1 244 1178 1421 MAG: Human papillomavirus isolate HPV-mSK_194, complete genome blastn 488 435 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
11473867 11473867 PRJNA980839_P_NODE_190009_length_255_cov_4.516484_g186225_i0 PRJNA980839 190009 255 4.516484 11.5170342 Betapolyomavirus 1891714 Viruses Viruses 468 1.94e-127   NTclustered gi|13345942|gb|AF332562.1| 1891767 g186225 i0 100 77.5450980392157 253 0 99 0 1 253 3273 3021 Simian virus 40 strain 777, complete genome blastn 19774 468 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
13714064 13714064 PRJNA980839_P_NODE_84811_length_404_cov_2.012085_g81027_i0 PRJNA980839 84811 404 2.012085 8.1288234 Betapapillomavirus 1 337051 Viruses Viruses 747 0   NTclustered gi|333086|gb|M22961.1|PPHDELCG 333923 g81027 i0 100 14.4455445544554 404 0 100 0 1 404 3232 3635 Human papillomavirus type 5 DNA and naturally occurring deletions in the late region of the virus blastn 5836 747 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
16573182 16573182 PRJNA980839_P_NODE_79033_length_425_cov_1.747159_g75249_i0 PRJNA980839 79033 425 1.747159 7.42542575 Betapolyomavirus 1891714 Viruses Viruses 780 0   NTclustered gi|5053089|gb|AF156105.1| 1891767 g75249 i0 99.765 117.357647058824 425 1 100 0 1 425 3574 3998 Simian virus 40 strain VA45-54-2, complete genome blastn 49877 785 0.993630573248408 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
17537144 17537144 PRJNA980839_P_NODE_242374_length_235_cov_2.358025_g238590_i0 PRJNA980839 242374 235 2.358025 5.54135875 Betapapillomavirus 1 337051 Viruses Viruses 416 6.4799999999999985e-112   NTclustered gi|9627145|ref|NC_001531.1| 333923 g238590 i0 100 7.89787234042553 225 0 96 0 1 225 3146 2922 Human papillomoavirus type 5, complete genome blastn 1856 416 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;