RNAquarium Metadata Server
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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 16 ✖

bioproject 1

  • PRJNA980839 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2545452 2545452 PRJNA980839_P_NODE_125902_length_315_cov_3.123967_g122118_i0 PRJNA980839 125902 315 3.123967 9.84049605 root 1 Root_unresolved Root_unresolved 582 8.459999999999998e-162   NTclustered gi|992068117|gb|KC344485.2| 11036 g122118 i0 100 99.9047619047619 315 0 100 0 1 315 321 7 Venezuelan equine encephalitis virus strain VEEV/Equus ferus caballus/COL/CoAn5384/1967/IAB, complete genome blastn 31470 582 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus venezuelan
2546390 2546390 PRJNA980839_P_NODE_97842_length_367_cov_2.125850_g94058_i0 PRJNA980839 97842 367 2.12585 7.8018695 Respirovirus 186938 Viruses Viruses 673 0   NTclustered gi|60898|emb|X03614.1| 12730 g94058 i0 99.728 36.7656675749319 367 1 100 0 1 367 401 35 Sendai virus (strain Z) genome RNA 5'end blastn 13493 673 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
5098716 5098716 PRJNA980839_P_NODE_34364_length_837_cov_3.019634_g30931_i0 PRJNA980839 34364 837 3.019634 25.27433658 Respirovirus 186938 Viruses Viruses 1546 0   NTclustered gi|60898|emb|X03614.1| 12730 g30931 i0 100 47.3775388291517 837 0 100 0 1 837 4473 3637 Sendai virus (strain Z) genome RNA 5'end blastn 39655 1546 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
5098846 5098846 PRJNA980839_P_NODE_61424_length_513_cov_2.554545_g57647_i0 PRJNA980839 61424 513 2.554545 13.10481585 Respirovirus 186938 Viruses Viruses 878 0   NTclustered gi|60898|emb|X03614.1| 12730 g57647 i0 99.381 43.4736842105263 485 2 100 1 1 485 1883 2366 Sendai virus (strain Z) genome RNA 5'end blastn 22302 878 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
6374657 6374657 PRJNA980839_P_NODE_69325_length_468_cov_3.298734_g65543_i0 PRJNA980839 69325 468 3.298734 15.43807512 Respirovirus 186938 Viruses Viruses 857 0   NTclustered gi|60898|emb|X03614.1| 12730 g65543 i0 99.786 43.8888888888889 467 1 99 0 2 468 1445 1911 Sendai virus (strain Z) genome RNA 5'end blastn 20540 857 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
8923263 8923263 PRJNA980839_P_NODE_247347_length_211_cov_4.471014_g243563_i0 PRJNA980839 247347 211 4.471014 9.43383954 root 1 Root_unresolved Root_unresolved 390 3.459999999999999e-104   NTclustered gi|60898|emb|X03614.1| 12730 g243563 i0 100 41.2559241706161 211 0 100 0 1 211 4871 4661 Sendai virus (strain Z) genome RNA 5'end blastn 8705 390 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
9885016 9885016 PRJNA980839_P_NODE_126568_length_314_cov_4.000000_g122784_i0 PRJNA980839 126568 314 4 12.56 Alphavirus venezuelan 3426322 Viruses Viruses 231 3.52e-56   NTclustered gi|4262311|gb|AF075255.1|AF075255 11036 g122784 i0 81.25 0.917197452229299 288 52 91 2 26 312 2079 1793 Venezuelan equine encephalitis virus strain 71D-1252, complete genome blastn 288 231 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus venezuelan
11161311 11161311 PRJNA980839_P_NODE_172809_length_268_cov_1.579487_g169025_i0 PRJNA980839 172809 268 1.579487 4.23302516 Ripachij virus 3130407 Viruses Viruses 359 1.29e-94   NTclustered gi|2717319663|gb|PP172709.1| 3130407 g169025 i0 90.977 162.869402985075 266 24 99 0 1 266 707 442 MAG: Ripachij virus isolate KCAP1_k141_392510 genomic sequence blastn 43649 359 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripachij virus
12438752 12438752 PRJNA980839_P_NODE_4370_length_3040_cov_3.045838_g3655_i0 PRJNA980839 4370 3040 3.045838 92.5934752 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 1011 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g3655 i0 96.266 0.547039473684211 616 23 54 0 1 616 24 639 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 1663 1011 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
12439566 12439566 PRJNA980839_P_NODE_85590_length_401_cov_4.975610_g81806_i0 PRJNA980839 85590 401 4.97561 19.9521961 Alphavirus venezuelan 3426322 Viruses Viruses 324 7.38e-84   NTclustered gi|2624253565|gb|OR644784.1| 11036 g81806 i0 81.25 1.99501246882793 400 75 99 0 2 401 2661 3060 Venezuelan equine encephalitis virus strain 258263 F1/Panama/2015, partial genome blastn 800 324 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus venezuelan
12749371 12749371 PRJNA980839_P_NODE_19170_length_1350_cov_2.438528_g16725_i0 PRJNA980839 19170 1350 2.438528 32.920128 Respirovirus 186938 Viruses Viruses 2466 0   NTclustered gi|60898|emb|X03614.1| 12730 g16725 i0 99.703 43.4925925925926 1347 4 99 0 1 1347 4898 6244 Sendai virus (strain Z) genome RNA 5'end blastn 58715 2483 0.993153443415223 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
17537265 17537265 PRJNA980839_P_NODE_2494_length_3760_cov_6.553295_g2047_i0 PRJNA980839 2494 3760 6.553295 246.403892 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2327 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g2047 i0 91.983 0.769148936170213 1659 129 77 4 2104 3760 5329 6985 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 2892 2327 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
17848012 17848012 PRJNA980839_P_NODE_33094_length_864_cov_3.512010_g29715_i0 PRJNA980839 33094 864 3.51201 30.3437664 Respirovirus 186938 Viruses Viruses 1596 0   NTclustered gi|60898|emb|X03614.1| 12730 g29715 i0 100 45.6284722222222 864 0 100 0 1 864 469 1332 Sendai virus (strain Z) genome RNA 5'end blastn 39423 1596 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
18811827 18811827 PRJNA980839_P_NODE_63255_length_501_cov_4.766355_g59477_i0 PRJNA980839 63255 501 4.766355 23.87943855 Alphavirus venezuelan 3426322 Viruses Viruses 438 3.219999999999999e-118   NTclustered gi|2624253631|gb|OR644812.1| 11036 g59477 i0 82.47 99.8003992015968 502 86 100 2 1 501 375 875 Venezuelan equine encephalitis virus strain 248025/Panama/2010, partial genome blastn 50000 438 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus venezuelan
21672741 21672741 PRJNA980839_P_NODE_246237_length_226_cov_3.385621_g242453_i0 PRJNA980839 246237 226 3.385621 7.65150346 root 1 Root_unresolved Root_unresolved 392 1.04e-104   NTclustered gi|334975|gb|M14887.1|PAFVL 12730 g242453 i0 99.087 30.0398230088496 219 0 96 2 1 218 4137 3920 Sendai virus (5' end of the viral genome) L gene, complete cds blastn 6789 392 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
22948234 22948234 PRJNA980839_P_NODE_62398_length_507_cov_1.730415_g58620_i0 PRJNA980839 62398 507 1.730415 8.77320405 Respirovirus 186938 Viruses Viruses 915 0   NTclustered gi|60898|emb|X03614.1| 12730 g58620 i0 99.211 39.9250493096647 507 4 100 0 1 507 3049 3555 Sendai virus (strain Z) genome RNA 5'end blastn 20242 915 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;