RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA980839 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5097976 5097976 PRJNA980839_P_NODE_100204_length_362_cov_1.065744_g96420_i0 PRJNA980839 100204 362 1.065744 3.85799328 Chlamydomonas 3052 Plants Plants 375 1.79e-99   NTclustered gi|2082260397|ref|XM_043068042.1| 3055 g96420 i0 88.217 15.1740331491713 314 37 87 0 46 359 971 1284 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g498600v5), mRNA blastn 5493 375 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
6062380 6062380 PRJNA980839_P_NODE_233385_length_242_cov_0.911243_g229601_i0 PRJNA980839 233385 242 0.911243 2.20520806 Dunaliella viridis 140095 Plants Plants 309 1.17e-79   NTclustered gi|219563659|gb|FJ268732.1| 140095 g229601 i0 89.669 2.44628099173554 242 25 100 0 1 242 63269 63028 Dunaliella viridis strain SHU clone BAC 55A01 hypothetical protein, sodium-coupled phosphate transporter protein (SPT2), and hypothetical proteins genes, complete cds blastn 592 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella viridis
8611561 8611561 PRJNA980839_P_NODE_210387_length_248_cov_0.880000_g206603_i0 PRJNA980839 210387 248 0.88 2.1824 Nannochloris normandinae 926285 Plants Plants 459 1.13e-124   NTclustered gi|922575245|gb|JQ921007.1| 926285 g206603 i0 100 59.758064516129 248 0 100 0 1 248 801 1048 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 14820 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
11162036 11162036 PRJNA980839_P_NODE_210869_length_248_cov_0.880000_g207085_i0 PRJNA980839 210869 248 0.88 2.1824 Chlamydomonas sp. HS-5 108458 Plants Plants 126 1.2999999999999998e-24   NTclustered gi|6440787|dbj|AU066498.1| 108458 g207085 i0 80.357 28.4758064516129 168 31 67 2 82 248 454 288 Chlamydomonas sp. HS-5 mRNA for ribulose-bisphosphate carboxylase small chain precursor, NaCl inducible, complete cds, clone:NaEX96-11 blastn 7062 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. HS-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;