RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA980839 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14985934 14985934 PRJNA980839_P_NODE_180892_length_262_cov_1.534392_g177108_i0 PRJNA980839 180892 262 1.534392 4.02010704 Leishmania sp. Ghana 2012 LV757 2803181 Euglenozoa other_Eukaryota 156 1.77e-33   NTclustered gi|2795013649|ref|XM_067840494.1| 2803181 g177108 i0 81.218 3.88167938931298 197 33 74 4 64 258 627 433 Leishmania sp. Ghana 2012 LV757 uncharacterized protein (GH5_00359), partial mRNA blastn 1017 156 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Ghana 2012 LV757
15297893 15297893 PRJNA980839_P_NODE_169852_length_270_cov_2.253807_g166068_i0 PRJNA980839 169852 270 2.253807 6.0852789 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 126 1.44e-24   NTclustered gi|2414483|emb|Y00055.1| 5656 g166068 i0 76.094 69.1518518518518 297 40 100 20 1 270 7454 7162 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 18671 126 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
21672311 21672311 PRJNA980839_P_NODE_157577_length_280_cov_2.304348_g153793_i0 PRJNA980839 157577 280 2.304348 6.4521744 Leishmania 5658 Euglenozoa other_Eukaryota 219 2.4e-52   NTclustered gi|440222381|gb|JX030049.1| 5659 g153793 i0 95 60.1607142857143 140 6 50 1 142 280 822 683 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 16845 219 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;