RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980839" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA980839 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6061759 6061759 PRJNA980839_P_NODE_202725_length_250_cov_0.870056_g198941_i0 PRJNA980839 202725 250 0.870056 2.17514 Candidatus Dependentiae bacterium Noda2021 2891165 Bacteria Bacteria 156 1.68e-33   NTclustered gi|2131577866|dbj|AP025250.1| 2891165 g198941 i0 87.324 18.112 142 10 54 7 67 202 382503 382364 Candidatus Dependentiae bacterium Noda2021 DNA, complete genome blastn 4528 156 1 Bacteria Bacteria candidate phyla             Candidatus Dependentiae bacterium Noda2021
9885851 9885851 PRJNA980839_P_NODE_167768_length_272_cov_1.547739_g163984_i0 PRJNA980839 167768 272 1.547739 4.20985008 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 503 5.729999999999998e-138   NTclustered gi|2028829559|gb|CP072328.1| 713051 g163984 i0 100 1 272 0 100 0 1 272 917849 918120 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 272 503 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;