RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9883994 9883994 PRJNA980587_P_NODE_61108_length_290_cov_2.018433_g60315_i0 PRJNA980587 61108 290 2.018433 5.8534557 Opitutia bacterium KCR 482 3034326 Bacteria Bacteria 200 9.059999999999999e-47   NTclustered gi|2707273910|gb|CP149973.1| 3034326 g60315 i0 91.216 92.1241379310345 148 11 50 2 1 146 1392007 1391860 Opitutia bacterium KCR 482 chromosome, complete genome blastn 26716 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium KCR 482
13709869 13709869 PRJNA980587_P_NODE_86311_length_246_cov_0.890173_g85518_i0 PRJNA980587 86311 246 0.890173 2.18982558 Opitutus sp. GAS368 1882749 Bacteria Bacteria 211 3.46e-50   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g85518 i0 82.449 0.995934959349594 245 39 99 4 2 244 4067322 4067080 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 245 211 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;