RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
955864 955864 PRJNA980587_P_NODE_5661_length_1211_cov_8.995606_g5178_i0 PRJNA980587 5661 1211 8.995606 108.93678866 Copromyxa protea 931554 Tubulinea other_Eukaryota 894 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g5178 i0 84.945 11.5350949628406 910 107 73 21 274 1159 486 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 13969 894 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
11158904 11158904 PRJNA980587_P_NODE_30229_length_438_cov_3.712329_g29436_i0 PRJNA980587 30229 438 3.712329 16.26000102 Copromyxa protea 931554 Tubulinea other_Eukaryota 603 9.32e-168   NTclustered gi|508737347|dbj|AB766053.1| 931554 g29436 i0 91.879 26.1529680365297 431 35 98 0 8 438 491 61 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11455 603 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18807296 18807296 PRJNA980587_P_NODE_32615_length_418_cov_1.597101_g31822_i0 PRJNA980587 32615 418 1.597101 6.67588218 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 773 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g31822 i0 100 40.1411483253588 418 0 100 0 1 418 1295 1712 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 16779 773 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
21357489 21357489 PRJNA980587_P_NODE_28097_length_459_cov_4.329016_g27304_i0 PRJNA980587 28097 459 4.329016 19.87018344 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 721 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g27304 i0 95.556 93.442265795207 450 20 98 0 10 459 1149 700 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 42890 721 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;