RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980587 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13709086 13709086 PRJNA980587_P_NODE_28291_length_457_cov_3.643229_g27498_i0 PRJNA980587 28291 457 3.643229 16.64955653 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.044   NTclustered gi|687395434|emb|LK723276.1| 57078 g27498 i0 100 0.0612691466083151 28 0 6 0 364 391 13 40 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0297096 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
18807346 18807346 PRJNA980587_P_NODE_36715_length_388_cov_2.707937_g35922_i0 PRJNA980587 36715 388 2.707937 10.50679556 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 654 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g35922 i0 97.638 0.981958762886598 381 9 98 0 1 381 392 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 381 654 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
21357585 21357585 PRJNA980587_P_NODE_36137_length_392_cov_7.899687_g35344_i0 PRJNA980587 36137 392 7.899687 30.96677304 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 484 3.1199999999999996e-132   NTclustered gi|68479954|gb|DQ076149.1| 6182 g35344 i0 89.031 1 392 41 99 2 2 392 402 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 392 484 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
23908047 23908047 PRJNA980587_P_NODE_36699_length_388_cov_5.676190_g35906_i0 PRJNA980587 36699 388 5.67619 22.0236172 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 486 8.57e-133   NTclustered gi|68479954|gb|DQ076149.1| 6182 g35906 i0 89.556 0.987113402061856 383 40 99 0 6 388 407 25 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 383 486 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;