contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Mycoplasmatota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1269551 | 1269551 | PRJNA980587_P_NODE_54141_length_311_cov_1.731092_g53348_i0 | PRJNA980587 | 54141 | 311 | 1.731092 | 5.38369612 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 566 | 8.389999999999998e-157 | NTclustered | gi|1450419971|emb|LS991950.1| | 2100 | g53348 | i0 | 99.676 | 17.5337620578778 | 309 | 1 | 99 | 0 | 1 | 309 | 643482 | 643174 | Mycoplasma hyorhinis strain NCTC10130 genome assembly, chromosome: 1 | blastn | 5453 | 566 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 2231636 | 2231636 | PRJNA980587_P_NODE_88962_length_245_cov_0.889535_g88169_i0 | PRJNA980587 | 88962 | 245 | 0.889535 | 2.17936075 | Mycoplasma yeatsii | 51365 | Bacteria | Bacteria | 414 | 2.45e-111 | NTclustered | gi|756767228|gb|CP007520.1| | 743967 | g88169 | i0 | 97.531 | 46.4979591836735 | 243 | 4 | 99 | 2 | 1 | 242 | 673555 | 673796 | Mycoplasma yeatsii GM274B | blastn | 11392 | 414 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma yeatsii | ||
| 3505884 | 3505884 | PRJNA980587_P_NODE_15483_length_669_cov_1.906040_g14719_i0 | PRJNA980587 | 15483 | 669 | 1.90604 | 12.7514076 | Mycoplasma cottewii | 51364 | Bacteria | Bacteria | 1090 | 0 | NTclustered | gi|2294785939|gb|CP103424.1| | 51364 | g14719 | i0 | 96.114 | 2 | 669 | 25 | 100 | 1 | 1 | 669 | 48031 | 47364 | Mycoplasma cottewii strain VIS chromosome, complete genome | blastn | 1338 | 1090 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma cottewii | ||
| 5097853 | 5097853 | PRJNA980587_P_NODE_48024_length_332_cov_3.482625_g47231_i0 | PRJNA980587 | 48024 | 332 | 3.482625 | 11.562315 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 608 | 1.479999999999999e-169 | NTclustered | gi|1720621726|gb|CP035041.1| | 2100 | g47231 | i0 | 100 | 15.8704819277108 | 329 | 0 | 99 | 0 | 4 | 332 | 644093 | 643765 | Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome | blastn | 5269 | 608 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 12748788 | 12748788 | PRJNA980587_P_NODE_68210_length_274_cov_0.975124_g67417_i0 | PRJNA980587 | 68210 | 274 | 0.975124 | 2.67183976 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 501 | 2.08e-137 | NTclustered | gi|1720621726|gb|CP035041.1| | 2100 | g67417 | i0 | 99.635 | 15 | 274 | 1 | 100 | 0 | 1 | 274 | 818296 | 818023 | Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome | blastn | 4110 | 501 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 14023420 | 14023420 | PRJNA980587_P_NODE_75011_length_258_cov_1.664865_g74218_i0 | PRJNA980587 | 75011 | 258 | 1.664865 | 4.2953517 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 475 | 1.1799999999999999e-129 | NTclustered | gi|1720621726|gb|CP035041.1| | 2100 | g74218 | i0 | 100 | 14.9418604651163 | 257 | 0 | 99 | 0 | 1 | 257 | 355629 | 355373 | Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome | blastn | 3855 | 475 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 15297406 | 15297406 | PRJNA980587_P_NODE_34592_length_403_cov_2.430303_g33799_i0 | PRJNA980587 | 34592 | 403 | 2.430303 | 9.79412109 | Mollicutes | 31969 | Bacteria | Bacteria | 739 | 0 | NTclustered | gi|171703046|dbj|AB353273.1| | 2121 | g33799 | i0 | 99.752 | 109.975186104218 | 403 | 1 | 100 | 0 | 1 | 403 | 1474 | 1072 | Mycoplasma orale gene for 16S ribosomal RNA, partial sequence | blastn | 44320 | 745 | 0.991946308724832 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Metamycoplasma | Metamycoplasma orale | |||
| 15297504 | 15297504 | PRJNA980587_P_NODE_79032_length_251_cov_0.865169_g78239_i0 | PRJNA980587 | 79032 | 251 | 0.865169 | 2.17157419 | Mesomycoplasma | 2923352 | Bacteria | Bacteria | 462 | 8.869999999999999e-126 | NTclustered | gi|1720621726|gb|CP035041.1| | 2100 | g78239 | i0 | 100 | 14.9402390438247 | 250 | 0 | 99 | 0 | 2 | 251 | 590803 | 590554 | Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome | blastn | 3750 | 462 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Mesomycoplasma | Mesomycoplasma hyorhinis | |||
| 16258619 | 16258619 | PRJNA980587_P_NODE_49573_length_327_cov_1.196850_g48780_i0 | PRJNA980587 | 49573 | 327 | 1.19685 | 3.9136995 | Metamycoplasma orale | 2121 | Bacteria | Bacteria | 599 | 8.759999999999997e-167 | NTclustered | gi|1563679895|emb|LR214940.1| | 2121 | g48780 | i0 | 99.694 | 151.229357798165 | 327 | 1 | 100 | 0 | 1 | 327 | 698384 | 698710 | Mycoplasma orale strain NCTC10112 genome assembly, chromosome: 1 | blastn | 49452 | 599 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Metamycoplasmataceae | Metamycoplasma | Metamycoplasma orale | |||
| 25182506 | 25182506 | PRJNA980587_P_NODE_93700_length_242_cov_0.911243_g92907_i0 | PRJNA980587 | 93700 | 242 | 0.911243 | 2.20520806 | Mycoplasma cottewii | 51364 | Bacteria | Bacteria | 364 | 2.4699999999999992e-96 | NTclustered | gi|2294785939|gb|CP103424.1| | 51364 | g92907 | i0 | 93.802 | 1 | 242 | 15 | 100 | 0 | 1 | 242 | 869462 | 869703 | Mycoplasma cottewii strain VIS chromosome, complete genome | blastn | 242 | 364 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | Mycoplasma cottewii |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;