RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Haptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Haptophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4784433 4784433 PRJNA980587_P_NODE_85504_length_247_cov_0.885057_g84711_i0 PRJNA980587 85504 247 0.885057 2.18609079 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 139 1.67e-28   NTclustered gi|551613833|ref|XM_005787831.1| 280463 g84711 i0 78.947 0.846153846153846 209 41 84 3 33 240 1117 1323 Emiliania huxleyi CCMP1516 putative EF-1 alpha/Tu like protein (EFG1), mRNA blastn 209 139 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21358334 21358334 PRJNA980587_P_NODE_90497_length_244_cov_0.900585_g89704_i0 PRJNA980587 90497 244 0.900585 2.1974274 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 176 1.25e-39   NTclustered gi|551537780|ref|XM_005757418.1| 280463 g89704 i0 87.5 1.86885245901639 152 19 62 0 72 223 326 175 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 456 176 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;