RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
955956 955956 PRJNA980587_P_NODE_64161_length_283_cov_1.404762_g63368_i0 PRJNA980587 64161 283 1.404762 3.97547646 Didymium melanospermum 385451 Evosea other_Eukaryota 217 8.75e-52   NTclustered gi|2049856315|gb|MG963497.1| 385451 g63368 i0 81.413 64.6148409893993 269 46 94 4 1 267 133 399 Didymium melanospermum strain MA-Fungi 91238 elongation factor 1A (EF1a) gene, partial cds blastn 18286 217 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium melanospermum
1269616 1269616 PRJNA980587_P_NODE_8061_length_995_cov_9.647505_g7459_i0 PRJNA980587 8061 995 9.647505 95.99267475 Dictyostelium 5782 Evosea other_Eukaryota 348 1.15e-90   NTclustered gi|290046|gb|L11588.1|DDIRACIA 44689 g7459 i0 84.419 16.7798994974874 353 55 35 0 25 377 34 386 Dictyostelium discoideum rac1A protein mRNA, complete cds blastn 16696 348 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
2231040 2231040 PRJNA980587_P_NODE_47302_length_335_cov_1.923664_g46509_i0 PRJNA980587 47302 335 1.923664 6.4442744 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 104 8.6e-18   NTclustered gi|426281760|gb|JX681133.1| 1048528 g46509 i0 91.026 0.232835820895522 78 6 23 1 223 299 104 181 Stemonitopsis subcaespitosa actin gene, partial cds blastn 78 104 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
2231124 2231124 PRJNA980587_P_NODE_53262_length_314_cov_1.485477_g52469_i0 PRJNA980587 53262 314 1.485477 4.66439778 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 198 3.57e-46   NTclustered gi|354683888|gb|JN048920.1| 361077 g52469 i0 79.125 2.51910828025478 297 55 94 7 14 307 7 299 Tieghemostelium lacteum 60S ribosomal protein L5 gene, complete cds blastn 791 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
4784180 4784180 PRJNA980587_P_NODE_68064_length_274_cov_1.268657_g67271_i0 PRJNA980587 68064 274 1.268657 3.47612018 Heterostelium album 2086695 Evosea other_Eukaryota 180 1.11e-40   NTclustered gi|1160559656|ref|XM_020577932.1| 670386 g67271 i0 78.7 56.3503649635037 277 53 100 6 1 274 829 556 Polysphondylium pallidum PN500 isocitrate dehydrogenase (idhC), partial mRNA blastn 15440 180 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
13709295 13709295 PRJNA980587_P_NODE_4491_length_1370_cov_104.513493_g4073_i0 PRJNA980587 4491 1370 104.513493 1431.8348541 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 1170 0   NTclustered gi|426281760|gb|JX681133.1| 1048528 g4073 i0 90.359 81.0956204379562 892 85 65 1 275 1166 896 6 Stemonitopsis subcaespitosa actin gene, partial cds blastn 111101 1170 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
17534052 17534052 PRJNA980587_P_NODE_76674_length_254_cov_2.458564_g75881_i0 PRJNA980587 76674 254 2.458564 6.24475256 Dictyostelium discoideum 44689 Evosea other_Eukaryota 344 3.4e-90   NTclustered gi|1040460865|dbj|LC159244.1| 44689 g75881 i0 90.977 37.6732283464567 266 9 99 9 2 254 480 217 Dictyostelium discoideum genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequence, strain: WS-18 blastn 9569 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
18807579 18807579 PRJNA980587_P_NODE_53495_length_313_cov_1.837500_g52702_i0 PRJNA980587 53495 313 1.8375 5.751375 Acytostelium subglobosum 361139 Evosea other_Eukaryota 198 3.55e-46   NTclustered gi|831772027|ref|XM_012898029.1| 1410327 g52702 i0 78.689 2.06389776357827 305 59 96 6 6 307 1282 1583 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 646 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
20082045 20082045 PRJNA980587_P_NODE_30116_length_439_cov_3.098361_g29323_i0 PRJNA980587 30116 439 3.098361 13.60180479 Dictyostelium purpureum 5786 Evosea other_Eukaryota 58.4 0.001   NTclustered gi|330792848|ref|XM_003284451.1| 5786 g29323 i0 100 0.0706150341685649 31 0 7 0 103 133 206 176 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_96730), partial mRNA blastn 31 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
20082455 20082455 PRJNA980587_P_NODE_63976_length_283_cov_2.200000_g63183_i0 PRJNA980587 63976 283 2.2 6.226 Entamoeba dispar 46681 Evosea other_Eukaryota 183 8.879999999999997e-42   NTclustered gi|167386633|ref|XM_001737796.1| 370354 g63183 i0 79.615 4.25088339222615 260 49 91 4 26 283 915 658 Entamoeba dispar SAW760 26S protease regulatory subunit 6B, putative (EDI_044950), partial mRNA blastn 1203 183 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
20082607 20082607 PRJNA980587_P_NODE_7456_length_1040_cov_2.747673_g6876_i0 PRJNA980587 7456 1040 2.747673 28.5757992 Dictyostelium purpureum 5786 Evosea other_Eukaryota 856 0   NTclustered gi|330802803|ref|XM_003289355.1| 5786 g6876 i0 82.247 93.6663461538461 997 171 96 6 1 994 1039 46 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_72679), mRNA blastn 97413 856 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
21357964 21357964 PRJNA980587_P_NODE_61977_length_288_cov_1.432558_g61184_i0 PRJNA980587 61977 288 1.432558 4.12576704 Physarum polycephalum 5791 Evosea other_Eukaryota 278 4.04e-70   NTclustered gi|15284033|dbj|AB070528.1| 5791 g61184 i0 84.507 140.513888888889 284 40 98 4 1 282 374 93 Physarum polycephalum ub4 mRNA for ubiquitin 4, complete cds blastn 40468 278 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
25181990 25181990 PRJNA980587_P_NODE_57620_length_301_cov_0.916667_g56827_i0 PRJNA980587 57620 301 0.916667 2.75916767 Cavostelium apophysatum 435410 Evosea other_Eukaryota 287 7.050000000000001e-73   NTclustered gi|146448837|gb|EF513185.1| 435410 g56827 i0 84.354 89.5980066445183 294 44 97 2 7 299 467 759 Cavostelium apophysatum elongation factor 1A (EF1A) gene, partial cds blastn 26969 287 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Cavostelium Cavostelium apophysatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;