RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3506080 3506080 PRJNA980587_P_NODE_34763_length_402_cov_1.854103_g33970_i0 PRJNA980587 34763 402 1.854103 7.45349406 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 163 1.7099999999999998e-35   NTclustered gi|470531480|ref|XM_004358015.1| 1257118 g33970 i0 78.486 17.1940298507463 251 52 62 2 102 351 296 47 Acanthamoeba castellanii str. Neff ribosomal protein L31e, putative (ACA1_119160), partial mRNA blastn 6912 163 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12434839 12434839 PRJNA980587_P_NODE_43830_length_349_cov_2.655797_g43037_i0 PRJNA980587 43830 349 2.655797 9.26873153 Ripella decalvata 2047822 Discosea other_Eukaryota 555 2.0599999999999994e-153   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g43037 i0 95.442 95.9140401146132 351 11 99 5 2 349 985 637 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 33474 555 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
18807165 18807165 PRJNA980587_P_NODE_18655_length_595_cov_8.406130_g17872_i0 PRJNA980587 18655 595 8.40613 50.0164735 Platyamoeba placida 3454475 Discosea other_Eukaryota 756 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g17872 i0 89.58 98.8890756302521 595 62 100 0 1 595 1127 533 Platyamoeba placida actin mRNA, partial cds blastn 58839 756 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
18807450 18807450 PRJNA980587_P_NODE_44835_length_345_cov_1.790441_g44042_i0 PRJNA980587 44835 345 1.790441 6.17702145 Platyamoeba placida 3454475 Discosea other_Eukaryota 444 4.6099999999999996e-120   NTclustered gi|33946348|gb|AY294153.1| 197527 g44042 i0 90.294 96.2608695652174 340 32 98 1 7 345 85 424 Platyamoeba placida actin mRNA, partial cds blastn 33210 444 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
20082597 20082597 PRJNA980587_P_NODE_73836_length_261_cov_1.281915_g73043_i0 PRJNA980587 73836 261 1.281915 3.34579815 Vannella septentrionalis 197531 Discosea other_Eukaryota 431 2.62e-116   NTclustered gi|300078499|gb|GU001161.1| 197531 g73043 i0 96.538 0.996168582375479 260 9 99 0 1 260 1358 1617 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 260 431 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
23908277 23908277 PRJNA980587_P_NODE_52999_length_315_cov_1.272727_g52206_i0 PRJNA980587 52999 315 1.272727 4.00909005 Acanthamoeba astronyxis 65658 Discosea other_Eukaryota 99 3.73e-16   NTclustered gi|28194602|gb|AF479546.1| 65658 g52206 i0 77.401 12.4920634920635 177 33 55 6 142 314 682 855 Acanthamoeba astronyxis strain ATCC 30137 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 3935 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba astronyxis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;