RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8922529 8922529 PRJNA980587_P_NODE_87467_length_245_cov_2.238372_g86674_i0 PRJNA980587 87467 245 2.238372 5.4840114 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 200 7.46e-47   NTclustered gi|1340330126|gb|MG909562.1| 49261 g86674 i0 82.906 90.3510204081633 234 28 95 8 13 245 646 868 Thalassiosira eccentrica clone 6 large subunit ribosomal RNA gene, partial sequence blastn 22136 200 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira eccentrica
14983729 14983729 PRJNA980587_P_NODE_60772_length_291_cov_1.766055_g59979_i0 PRJNA980587 60772 291 1.766055 5.13922005 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 281 3.16e-71   NTclustered gi|657012367|gb|KF302531.1| 2850 g59979 i0 92.386 87.8281786941581 197 15 68 0 86 282 23 219 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 25558 281 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;