RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11473244 11473244 PRJNA980587_P_NODE_11969_length_788_cov_4.458741_g11250_i0 PRJNA980587 11969 788 4.458741 35.13487908 root 1 Root_unresolved Root_unresolved 1456 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g11250 i0 100 99.9340101522843 788 0 100 0 1 788 1516 2303 Moloney murine leukemia virus, complete genome blastn 78748 1456 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12435066 12435066 PRJNA980587_P_NODE_62130_length_288_cov_1.153488_g61337_i0 PRJNA980587 62130 288 1.153488 3.32204544 Gammaretrovirus gibleu 3428953 Viruses Viruses 507 4.73e-139   NTclustered gi|971888245|gb|KT724047.1| 11840 g61337 i0 98.601 3.97222222222222 286 4 99 0 1 286 6518 6803 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 1144 507 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;