RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA980587" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA980587 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4783497 4783497 PRJNA980587_P_NODE_12224_length_779_cov_1.378187_g11502_i0 PRJNA980587 12224 779 1.378187 10.73607673 brine shrimp chuvirus 1 2900479 Viruses Viruses 100 2.75e-16   NTclustered gi|2177952885|gb|OL452274.1| 2900479 g11502 i0 91.667 0.553273427471117 72 6 9 0 2 73 7101 7030 MAG: Brine shrimp chuvirus 1 isolate YC/91, complete genome blastn 431 100 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae   brine shrimp chuvirus 1
11473378 11473378 PRJNA980587_P_NODE_93869_length_242_cov_0.899408_g93076_i0 PRJNA980587 93869 242 0.899408 2.17656736 Tobamovirus 12234 Viruses Viruses 446 8.559999999999998e-121   NTclustered gi|226235018|dbj|AB355139.1| 12253 g93076 i0 100 99.5867768595041 241 0 99 0 2 242 5134 4894 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 24100 446 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
12748787 12748787 PRJNA980587_P_NODE_67590_length_275_cov_1.356436_g66797_i0 PRJNA980587 67590 275 1.356436 3.730199 Tobamovirus 12234 Viruses Viruses 503 5.809999999999998e-138   NTclustered gi|226235018|dbj|AB355139.1| 12253 g66797 i0 99.636 99.6072727272727 275 1 100 0 1 275 3392 3118 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 27392 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
13709586 13709586 PRJNA980587_P_NODE_65931_length_279_cov_1.252427_g65138_i0 PRJNA980587 65931 279 1.252427 3.49427133 Zebrafish picornavirus 1 2304617 Viruses Viruses 488 1.6499999999999999e-133   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g65138 i0 98.208 3.9247311827957 279 5 100 0 1 279 8109 7831 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1095 488 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
14984142 14984142 PRJNA980587_P_NODE_89012_length_245_cov_0.860465_g88219_i0 PRJNA980587 89012 245 0.860465 2.10813925 Ripachij virus 3130407 Viruses Viruses 399 6.859999999999999e-107   NTclustered gi|2717319663|gb|PP172709.1| 3130407 g88219 i0 96.296 92.0938775510204 243 9 99 0 1 243 730 488 MAG: Ripachij virus isolate KCAP1_k141_392510 genomic sequence blastn 22563 399 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripachij virus
20395889 20395889 PRJNA980587_P_NODE_33396_length_412_cov_1.722714_g32603_i0 PRJNA980587 33396 412 1.722714 7.09758168 Tobamovirus 12234 Viruses Viruses 734 0   NTclustered gi|226235018|dbj|AB355139.1| 12253 g32603 i0 98.786 100.009708737864 412 5 100 0 1 412 3596 4007 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 41204 734 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;