RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980585 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
954556 954556 PRJNA980585_P_NODE_22221_length_310_cov_2.957806_g21967_i0 PRJNA980585 22221 310 2.957806 9.1691986 Candidatus Haliotispira prima 3034016 Bacteria Bacteria 54.7 0.008   NTclustered gi|2496317507|gb|CP123443.1| 3034016 g21967 i0 96.875 0.193548387096774 32 1 10 0 68 99 3002081 3002112 Candidatus Haliotispira prima strain SP-2023 chromosome blastn 60 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Candidatus Haliotispira Candidatus Haliotispira prima
3505535 3505535 PRJNA980585_P_NODE_45923_length_249_cov_0.875000_g45669_i0 PRJNA980585 45923 249 0.875 2.17875 Spirochaetota bacterium 2202144 Bacteria Bacteria 132 2.81e-26   NTclustered gi|2621703426|emb|OY760686.1| 2202144 g45669 i0 86.667 34.3333333333333 120 15 48 1 3 122 1138 1256 MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 blastn 8549 132 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
13708268 13708268 PRJNA980585_P_NODE_26611_length_289_cov_1.393519_g26357_i0 PRJNA980585 26611 289 1.393519 4.02726991 Leptospira sp. severe_002 2838237 Bacteria Bacteria 143 1.54e-29   NTclustered gi|2120242214|gb|CP075692.1| 2838237 g26357 i0 90.654 31.9930795847751 107 10 37 0 5 111 451801 451907 Leptospira sp. severe_002 chromosome 1 blastn 9246 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira sp. severe_002
22631998 22631998 PRJNA980585_P_NODE_43618_length_250_cov_0.870056_g43364_i0 PRJNA980585 43618 250 0.870056 2.17514 Leptospira cinconiae 3235173 Bacteria Bacteria 457 4.1099999999999985e-124   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g43364 i0 99.6 29.12 250 1 100 0 1 250 3191142 3191391 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 7280 457 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;