RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA980585 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14983096 14983096 PRJNA980585_P_NODE_6152_length_517_cov_3.979730_g5898_i0 PRJNA980585 6152 517 3.97973 20.5752041 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 309 2.72e-79   NTclustered gi|294889472|ref|XM_002772784.1| 423536 g5898 i0 81.088 16.9090909090909 386 73 75 0 132 517 523 138 Perkinsus marinus ATCC 50983 translation elongation factor EF-1, subunit alpha,, putative, mRNA blastn 8742 309 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
20081347 20081347 PRJNA980585_P_NODE_36356_length_262_cov_1.375661_g36102_i0 PRJNA980585 36356 262 1.375661 3.60423182 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.09e-15   NTclustered gi|294867228|ref|XM_002764969.1| 423536 g36102 i0 88.608 1.90076335877863 79 9 30 0 9 87 841 919 Perkinsus marinus ATCC 50983 Vacuolar protein sorting-associated protein, putative, mRNA blastn 498 97.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;