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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980585 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1269306 1269306 PRJNA980585_P_NODE_21301_length_316_cov_1.189300_g21047_i0 PRJNA980585 21301 316 1.1893 3.758188 Rhabditidae 6243 Nematoda Nematoda 128 4.78e-25   NTclustered gi|157431636|gb|AY602177.2| 35559 g21047 i0 96.203 24.8544303797468 79 2 25 1 1 79 1901 1824 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 7854 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
3821326 3821326 PRJNA980585_P_NODE_38743_length_255_cov_1.692308_g38489_i0 PRJNA980585 38743 255 1.692308 4.3153854 Aphelenchoides 90723 Nematoda Nematoda 383 7.23e-102   NTclustered gi|975149648|gb|KT692695.1| 1052528 g38489 i0 94.048 63.1490196078431 252 15 99 0 4 255 269 18 Aphelenchoides fujianensis isolate DJ12F clone 1 28S ribosomal RNA gene, partial sequence blastn 16103 383 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
4783207 4783207 PRJNA980585_P_NODE_49484_length_247_cov_0.885057_g49230_i0 PRJNA980585 49484 247 0.885057 2.18609079 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 206 1.6199999999999998e-48   NTclustered gi|256709136|gb|GQ422220.1| 669147 g49230 i0 82.759 71.6072874493927 232 38 94 2 2 232 645 415 Tylopharynx sp. WEM-2009 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 17687 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009
5097621 5097621 PRJNA980585_P_NODE_11544_length_398_cov_7.873846_g11290_i0 PRJNA980585 11544 398 7.873846 31.33790708 Metazoa 33208 Nematoda Nematoda 320 9.46e-83   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g11290 i0 84.688 79.1507537688442 320 49 80 0 12 331 374 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 31502 320 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
6058389 6058389 PRJNA980585_P_NODE_52725_length_245_cov_0.895349_g52471_i0 PRJNA980585 52725 245 0.895349 2.19360505 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.41e-121   NTclustered gi|156399|gb|J01050.1|CELMYUNC 6239 g52471 i0 99.592 5.98367346938775 245 1 100 0 1 245 5916 5672 Caenorhabditis elegans myosin heavy chain (unc54) gene, complete cds blastn 1466 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8607343 8607343 PRJNA980585_P_NODE_14907_length_360_cov_4.418118_g14653_i0 PRJNA980585 14907 360 4.418118 15.9052248 Necator americanus 51031 Nematoda Nematoda 296 1.43e-75   NTclustered gi|2707603671|ref|XM_064207038.1| 51031 g14653 i0 82.216 93.1555555555556 343 61 95 0 13 355 11 353 Necator americanus uncharacterized protein (RB195_016055), partial mRNA blastn 33536 296 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
8922277 8922277 PRJNA980585_P_NODE_38227_length_257_cov_1.255435_g37973_i0 PRJNA980585 38227 257 1.255435 3.22646795 Nematoda 6231 Nematoda Nematoda 163 1.04e-35   NTclustered gi|687022666|emb|LM525580.1| 174720 g37973 i0 84.337 14.3424124513619 166 26 65 0 3 168 236998 237163 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 3686 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10198061 10198061 PRJNA980585_P_NODE_49928_length_246_cov_3.520231_g49674_i0 PRJNA980585 49928 246 3.520231 8.65976826 Metazoa 33208 Nematoda Nematoda 99 2.81e-16   NTclustered gi|150982145|gb|EF634661.1| 452808 g49674 i0 86.022 20.1382113821138 93 11 37 2 72 163 391 300 Pristionchus sp. 14 RS5230 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 4954 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 14 RS5230
12433731 12433731 PRJNA980585_P_NODE_20650_length_320_cov_1.056680_g20396_i0 PRJNA980585 20650 320 1.05668 3.381376 Ancylostoma caninum 29170 Nematoda Nematoda 54.7 0.008   NTclustered gi|334262922|gb|JF826240.1| 29170 g20396 i0 100 0.090625 29 0 9 0 46 74 579 551 Ancylostoma caninum small GTPase cdc-42 mRNA, complete cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
16571769 16571769 PRJNA980585_P_NODE_11613_length_397_cov_2.614198_g11359_i0 PRJNA980585 11613 397 2.614198 10.37836606 Opisthokonta 33154 Nematoda Nematoda 54.7 0.011   NTclustered gi|2158413889|ref|XM_045235375.1| 6238 g11359 i0 100 0.153652392947103 29 0 7 0 120 148 474 446 Caenorhabditis briggsae Protein CBG05506 (CBG05506), partial mRNA blastn 61 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
17532858 17532858 PRJNA980585_P_NODE_41034_length_251_cov_0.865169_g40780_i0 PRJNA980585 41034 251 0.865169 2.17157419 Caenorhabditis remanei 31234 Nematoda Nematoda 158 4.69e-34   NTclustered gi|308452822|ref|XM_003089146.1| 31234 g40780 i0 85.161 17.5258964143426 155 21 61 2 1 154 248 95 Caenorhabditis remanei uncharacterized protein (GCK72_014297), partial mRNA blastn 4399 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
17847004 17847004 PRJNA980585_P_NODE_50574_length_246_cov_0.890173_g50320_i0 PRJNA980585 50574 246 0.890173 2.18982558 Caenorhabditis 6237 Nematoda Nematoda 121 6.01e-23   NTclustered gi|268558427|ref|XM_002637158.1| 6238 g50320 i0 82.27 2.45121951219512 141 23 57 2 3 142 61 200 Caenorhabditis briggsae Protein CBR-EMO-1 (Cbr-emo-1), partial mRNA blastn 603 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20395711 20395711 PRJNA980585_P_NODE_25036_length_296_cov_0.919283_g24782_i0 PRJNA980585 25036 296 0.919283 2.72107768 Metazoa 33208 Nematoda Nematoda 176 1.56e-39   NTclustered gi|2707544751|ref|XM_064178973.1| 51031 g24782 i0 85.976 51.4189189189189 164 23 55 0 133 296 519 356 Necator americanus uncharacterized protein (RB195_006096), partial mRNA blastn 15220 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
21356619 21356619 PRJNA980585_P_NODE_24117_length_300_cov_1.859031_g23863_i0 PRJNA980585 24117 300 1.859031 5.577093 Caenorhabditis briggsae 6238 Nematoda Nematoda 237 7.18e-58   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g23863 i0 88.718 64.24 195 20 65 2 1 194 1114 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 19272 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
23907472 23907472 PRJNA980585_P_NODE_45139_length_249_cov_0.875000_g44885_i0 PRJNA980585 45139 249 0.875 2.17875 Caenorhabditis elegans 6239 Nematoda Nematoda 158 4.639999999999999e-34   NTclustered gi|687865590|emb|LK927653.1| 6239 g44885 i0 87.97 10.7670682730924 133 16 53 0 23 155 95477 95345 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000016 blastn 2681 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25180615 25180615 PRJNA980585_P_NODE_18960_length_330_cov_1.198444_g18706_i0 PRJNA980585 18960 330 1.198444 3.9548652 Caenorhabditis briggsae 6238 Nematoda Nematoda 206 2.25e-48   NTclustered gi|268559571|ref|XM_002637731.1| 6238 g18706 i0 81.855 32.4393939393939 248 41 75 4 9 254 1081 1326 Caenorhabditis briggsae Protein CBR-DAF-21 (Cbr-daf-21), partial mRNA blastn 10705 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;