RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3505355 3505355 PRJNA980585_P_NODE_34823_length_266_cov_1.595855_g34569_i0 PRJNA980585 34823 266 1.595855 4.2449743 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 281 2.85e-71   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g34569 i0 86.154 4.61278195488722 260 36 98 0 5 264 1584296 1584037 Gemmatimonas phototrophica strain AP64, complete genome blastn 1227 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
9883173 9883173 PRJNA980585_P_NODE_52228_length_245_cov_0.895349_g51974_i0 PRJNA980585 52228 245 0.895349 2.19360505 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 427 3.14e-115   NTclustered gi|2874253728|emb|OY969570.1| 412054 g51974 i0 97.976 109.922448979592 247 3 100 1 1 245 172169 172415 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 26931 427 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22947132 22947132 PRJNA980585_P_NODE_59758_length_241_cov_1.369048_g59504_i0 PRJNA980585 59758 241 1.369048 3.29940568 Pseudomonadati 3379134 Bacteria Bacteria 254 5.54e-63   NTclustered gi|575461033|gb|CP007129.1| 861299 g59504 i0 87.013 128.572614107884 231 22 94 8 1 227 566896 567122 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 30986 254 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;