RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA980585 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9882993 9882993 PRJNA980585_P_NODE_39848_length_252_cov_1.709497_g39594_i0 PRJNA980585 39848 252 1.709497 4.30793244 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 394 3.3e-105   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g39594 i0 95.2 133.503968253968 250 10 99 2 3 251 220673 220921 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 33643 394 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
9883061 9883061 PRJNA980585_P_NODE_44288_length_249_cov_1.267045_g44034_i0 PRJNA980585 44288 249 1.267045 3.15494205 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 412 8.97e-111   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g44034 i0 96.761 83.3855421686747 247 8 99 0 3 249 799835 800081 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 20763 412 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
19120806 19120806 PRJNA980585_P_NODE_61135_length_241_cov_0.916667_g60881_i0 PRJNA980585 61135 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 424 3.99e-114   NTclustered gi|2028829559|gb|CP072328.1| 713051 g60881 i0 98.34 2.96680497925311 241 4 100 0 1 241 786976 787216 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 715 424 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
25181083 25181083 PRJNA980585_P_NODE_45060_length_249_cov_0.875000_g44806_i0 PRJNA980585 45060 249 0.875 2.17875 Candidatus Southlakia epibionticum 3043284 Bacteria Bacteria 399 6.989999999999999e-107   NTclustered gi|2516687873|gb|CP124550.1| 3043284 g44806 i0 95.582 370.722891566265 249 11 100 0 1 249 151077 151325 Candidatus Southlakia epibionticum strain ML1 chromosome, complete genome blastn 92310 399 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Southlakia Candidatus Southlakia epibionticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;