RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6057865 6057865 PRJNA980585_P_NODE_22105_length_311_cov_1.424370_g21851_i0 PRJNA980585 22105 311 1.42437 4.4297907 uncultured delta proteobacterium 34034 Bacteria Bacteria 475 1.4599999999999995e-129   NTclustered gi|451917356|gb|KC451220.1| 34034 g21851 i0 94.212 85.9807073954984 311 18 100 0 1 311 48 358 Uncultured delta proteobacterium clone RLBp2603 16S ribosomal RNA gene, partial sequence blastn 26740 475 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13708411 13708411 PRJNA980585_P_NODE_3491_length_657_cov_3.030822_g3240_i0 PRJNA980585 3491 657 3.030822 19.91250054 uncultured delta proteobacterium 34034 Bacteria Bacteria 859 0   NTclustered gi|374854163|dbj|AP011765.1| 34034 g3240 i0 90.382 164.018264840183 655 62 99 1 1 655 12745 13398 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 107760 859 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18806487 18806487 PRJNA980585_P_NODE_29255_length_281_cov_6.750000_g29001_i0 PRJNA980585 29255 281 6.75 18.9675 uncultured delta proteobacterium 34034 Bacteria Bacteria 206 1.88e-48   NTclustered gi|374854163|dbj|AP011765.1| 34034 g29001 i0 80.282 49.5124555160142 284 46 99 5 2 281 13884 13607 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 13913 206 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;