RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA980585" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 5 ✖

bioproject 1

  • PRJNA980585 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6057884 6057884 PRJNA980585_P_NODE_23285_length_304_cov_2.523810_g23031_i0 PRJNA980585 23285 304 2.52381 7.6723824 Thecamonas trahens 529818 Root_unresolved Root_unresolved 172 2.08e-38   NTclustered gi|923133736|ref|XM_013904880.1| 461836 g23031 i0 87.333 49.9276315789474 150 19 49 0 1 150 264 115 Thecamonas trahens ATCC 50062 ADP-ribosylation factor 1 (AMSG_02990), mRNA blastn 15178 172 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14982577 14982577 PRJNA980585_P_NODE_29152_length_282_cov_1.215311_g28898_i0 PRJNA980585 29152 282 1.215311 3.42717702 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 379 1.05e-100   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g28898 i0 92.308 46.1347517730496 273 12 96 5 1 271 1014 749 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13010 379 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
20081596 20081596 PRJNA980585_P_NODE_51456_length_246_cov_0.890173_g51202_i0 PRJNA980585 51456 246 0.890173 2.18982558 Singekia franciliensis 2925418 Root_unresolved Root_unresolved 156 1.65e-33   NTclustered gi|2206682165|gb|OM966638.1| 2925418 g51202 i0 98.851 37.739837398374 87 1 35 0 1 87 3811 3897 Singekia franciliensis strain ORSAYFEB19APU1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9284 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia franciliensis
23907661 23907661 PRJNA980585_P_NODE_58719_length_242_cov_0.911243_g58465_i0 PRJNA980585 58719 242 0.911243 2.20520806 Thecamonas trahens 529818 Root_unresolved Root_unresolved 198 2.6499999999999997e-46   NTclustered gi|923135134|ref|XM_013905579.1| 461836 g58465 i0 85.34 41.5950413223141 191 28 79 0 51 241 200 10 Thecamonas trahens ATCC 50062 60S ribosomal protein L27a (AMSG_02000), mRNA blastn 10066 198 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
25180689 25180689 PRJNA980585_P_NODE_23800_length_302_cov_1.344978_g23546_i0 PRJNA980585 23800 302 1.344978 4.06183356 Karpovia croatica 2925417 Root_unresolved Root_unresolved 104 7.65e-18   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g23546 i0 88.506 19.0430463576159 87 9 29 1 196 282 6020 6105 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5751 104 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;