RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA977246 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16571455 16571455 PRJNA977246_S_NODE_36293_length_196_cov_1.616766_g35301_i0 PRJNA977246 36293 196 1.616766 3.16886136 Bacteria 2 Bacteria Bacteria 340 3.229999999999999e-89   NTclustered gi|2793119032|gb|CP126501.1| 44754 g35301 i0 98.454 4.96938775510204 194 2 98 1 4 196 520598 520791 Fervidobacterium gondwanense strain CBS-13020 chromosome, complete genome blastn 974 340 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium gondwanense
20395085 20395085 PRJNA977246_S_NODE_12636_length_421_cov_6.091837_g11665_i0 PRJNA977246 12636 421 6.091837 25.64663377 Fervidobacterium 2422 Bacteria Bacteria 693 0   NTclustered gi|2216421086|gb|CP014334.2| 2423 g11665 i0 97.995 31.3586698337292 399 8 95 0 12 410 304885 305283 Fervidobacterium islandicum strain AW-1 chromosome, complete genome blastn 13202 693 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium islandicum
21671078 21671078 PRJNA977246_S_NODE_11757_length_439_cov_9095.436585_g10797_i0 PRJNA977246 11757 439 9095.436585 39928.96660815 Fervidobacterium 2422 Bacteria Bacteria 628 1.5399999999999998e-175   NTclustered gi|2216421086|gb|CP014334.2| 2423 g10797 i0 98.87 94.9612756264237 354 1 80 3 37 389 288213 287862 Fervidobacterium islandicum strain AW-1 chromosome, complete genome blastn 41688 628 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium islandicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;