RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA977246 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2226632 2226632 PRJNA977246_S_NODE_28642_length_235_cov_2.252427_g27650_i0 PRJNA977246 28642 235 2.252427 5.29320345 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 401 1.8199999999999993e-107   NTclustered gi|60698656|gb|AY915745.1| 6182 g27650 i0 97.447 14.6042553191489 235 6 100 0 1 235 186 420 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 3432 401 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
3501540 3501540 PRJNA977246_S_NODE_17103_length_344_cov_24.739683_g16111_i0 PRJNA977246 17103 344 24.739683 85.10450952 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 621 1.98e-173   NTclustered gi|1124902734|gb|AY812498.2| 6182 g16111 i0 99.705 98.5058139534884 339 1 99 0 6 344 998 1336 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 33886 627 0.990430622009569 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
3502011 3502011 PRJNA977246_S_NODE_33403_length_208_cov_10553.441341_g32411_i0 PRJNA977246 33403 208 10553.441341 21951.15798928 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 239 1.2999999999999999e-58   NTclustered gi|60600384|gb|AY810847.1| 6182 g32411 i0 93.711 108.043269230769 159 10 76 0 50 208 303 461 Schistosoma japonicum SJCHGC09639 protein mRNA, partial cds blastn 22473 239 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
8921962 8921962 PRJNA977246_S_NODE_49707_length_154_cov_11.864000_g48715_i0 PRJNA977246 49707 154 11.864 18.27056 Metazoa 33208 Platyhelminthes Platyhelminthes 276 6.890000000000001e-70   NTclustered gi|60687563|gb|AY914894.1| 6182 g48715 i0 99.346 99.3506493506493 153 0 99 1 1 153 264 113 Schistosoma japonicum unknown mRNA blastn 15300 276 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;