RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA977246 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7328833 7328833 PRJNA977246_S_NODE_20726_length_301_cov_589.283088_g19734_i0 PRJNA977246 20726 301 589.283088 1773.74209488 Ruditapes philippinarum 129788 Mollusca Mollusca 182 3.42e-41   NTclustered gi|2616654774|ref|XM_060745390.1| 129788 g19734 i0 84.375 50.4119601328904 192 22 62 5 81 268 1448 1261 PREDICTED: Ruditapes philippinarum tubulin beta chain-like (LOC132754715), mRNA blastn 15174 182 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Ruditapes Ruditapes philippinarum
14979167 14979167 PRJNA977246_S_NODE_29712_length_228_cov_3.753769_g28720_i0 PRJNA977246 29712 228 3.753769 8.55859332 Aplysia californica 6500 Mollusca Mollusca 52.8 0.02   NTclustered gi|325296890|ref|NM_001204548.1| 6500 g28720 i0 100 0.12280701754386 28 0 12 0 201 228 16 43 Aplysia californica bradykinin-like neuropeptide (LUQ-1), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
20395439 20395439 PRJNA977246_S_NODE_46236_length_163_cov_2.052239_g45244_i0 PRJNA977246 46236 163 2.052239 3.34514957 Opisthokonta 33154 Mollusca Mollusca 56.5 0.001   NTclustered gi|1897917262|ref|XM_035968534.1| 6500 g45244 i0 100 0.815950920245399 30 0 18 0 99 128 10297 10268 PREDICTED: Aplysia californica titin (LOC101852537), mRNA blastn 133 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
22946553 22946553 PRJNA977246_S_NODE_27838_length_240_cov_5.805687_g26846_i0 PRJNA977246 27838 240 5.805687 13.9336488 Stylommatophora 6527 Mollusca Mollusca 390 4.029999999999999e-104   NTclustered gi|1220130452|gb|MF444881.1| 145438 g26846 i0 97.797 146.0375 227 3 94 1 16 240 2900 2674 Rumina decollata isolate rumd 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35049 390 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Subulinidae Rumina Rumina decollata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;