RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA977246 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11154923 11154923 PRJNA977246_S_NODE_34909_length_202_cov_1.832370_g33917_i0 PRJNA977246 34909 202 1.83237 3.7013874 Potexvirus trifolii 3433859 Viruses Viruses 302 1.5800000000000001e-77   NTclustered gi|1389531330|gb|MG600296.1| 12188 g33917 i0 93.564 21.9950495049505 202 13 100 0 1 202 441 642 White clover mosaic virus isolate WCMV-PV1 putative replicase protein and putative TGB1 protein genes, complete cds; and putative TGB2 protein gene, partial cds blastn 4443 302 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
13704549 13704549 PRJNA977246_S_NODE_16271_length_356_cov_174.675841_g15280_i0 PRJNA977246 16271 356 174.675841 621.84599396 Johnsongrass virus 2845206 Viruses Viruses 569 7.519999999999996e-158   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g15280 i0 100 114.457865168539 308 0 87 0 40 347 4689 4996 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 40747 569 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus
17528899 17528899 PRJNA977246_S_NODE_15294_length_372_cov_5878.282799_g14304_i0 PRJNA977246 15294 372 5878.282799 21867.21201228 Bromovirus BMV 3427622 Viruses Viruses 573 6.109999999999998e-159   NTclustered gi|1061246334|gb|KU726255.1| 12302 g14304 i0 99.06 70.8629032258064 319 3 86 0 6 324 1192 874 Brome mosaic virus segment RNA3, complete sequence blastn 26361 573 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
18803048 18803048 PRJNA977246_S_NODE_30355_length_224_cov_866.307692_g29363_i0 PRJNA977246 30355 224 866.307692 1940.52923008 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.006   NTclustered gi|1995060321|gb|MN450069.1| 12164 g29363 i0 100 0.629464285714286 29 0 13 0 188 216 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
20077814 20077814 PRJNA977246_S_NODE_27956_length_239_cov_8784.242857_g26964_i0 PRJNA977246 27956 239 8784.242857 20994.34042823 Johnsongrass virus 2845206 Viruses Viruses 339 1.4699999999999999e-88   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g26964 i0 98.942 73.1380753138075 189 2 79 0 51 239 1409 1597 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 17480 339 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus
25177286 25177286 PRJNA977246_S_NODE_24880_length_263_cov_4.098291_g23888_i0 PRJNA977246 24880 263 4.098291 10.77850533 Johnsongrass virus 2845206 Viruses Viruses 475 1.2e-129   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g23888 i0 99.24 7.98098859315589 263 2 100 0 1 263 7598 7860 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 2099 475 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;