RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA977246 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7329314 7329314 PRJNA977246_S_NODE_40606_length_179_cov_4.120000_g39614_i0 PRJNA977246 40606 179 4.12 7.3748 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 285 1.3699999999999998e-72   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g39614 i0 99.363 1.75418994413408 157 1 88 0 1 157 1553765 1553609 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 314 285 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
9879735 9879735 PRJNA977246_S_NODE_45308_length_165_cov_2.933824_g44316_i0 PRJNA977246 45308 165 2.933824 4.8408096 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 122 1.0399999999999997e-23   NTclustered gi|575461033|gb|CP007129.1| 861299 g44316 i0 81.579 2.76969696969697 152 24 91 4 6 155 1067931 1068080 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 457 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12430481 12430481 PRJNA977246_S_NODE_26530_length_250_cov_3.289593_g25538_i0 PRJNA977246 26530 250 3.289593 8.2239825 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 243 1.25e-59   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g25538 i0 85.652 49.388 230 33 92 0 13 242 802614 802843 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 12347 243 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
21353535 21353535 PRJNA977246_S_NODE_37677_length_190_cov_3.037267_g36685_i0 PRJNA977246 37677 190 3.037267 5.7708073 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 156 1.21e-33   NTclustered gi|575456455|gb|CP007128.1| 861299 g36685 i0 81.959 2.04210526315789 194 26 100 9 1 190 3042707 3042519 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 388 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;