RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA977246" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA977246 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3501986 3501986 PRJNA977246_S_NODE_32403_length_213_cov_6.032609_g31411_i0 PRJNA977246 32403 213 6.032609 12.84945717 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 261 2.86e-65   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g31411 i0 88.94 58.6197183098592 217 16 100 8 1 213 6764 6552 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12486 261 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
6054243 6054243 PRJNA977246_S_NODE_16705_length_350_cov_4.894081_g15713_i0 PRJNA977246 16705 350 4.894081 17.1292835 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 603 7.279999999999998e-168   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g15713 i0 98 56.4771428571429 350 1 100 2 1 350 632 289 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 19767 603 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
7329180 7329180 PRJNA977246_S_NODE_34266_length_204_cov_929.217143_g33274_i0 PRJNA977246 34266 204 929.217143 1895.60297172 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 265 2.1e-66   NTclustered gi|909719647|gb|KT185627.1| 5778 g33274 i0 95.21 2.33333333333333 167 8 82 0 33 199 25807 25973 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 476 265 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8604035 8604035 PRJNA977246_S_NODE_22607_length_283_cov_4.980315_g21615_i0 PRJNA977246 22607 283 4.980315 14.09429145 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 457 4.7399999999999985e-124   NTclustered gi|399764260|gb|JQ271771.1| 1105345 g21615 i0 97.407 8.18021201413428 270 4 94 2 1 267 274 5 Vexillifera bacillipedes strain 1HZ 18S ribosomal RNA gene, partial sequence blastn 2315 457 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
14978941 14978941 PRJNA977246_S_NODE_20992_length_298_cov_7022.074349_g20000_i0 PRJNA977246 20992 298 7022.074349 20925.78156002 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 368 2.42e-97   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g20000 i0 94.538 58.9664429530201 238 13 80 0 51 288 1547 1784 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17572 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
17846408 17846408 PRJNA977246_S_NODE_23674_length_273_cov_14.032787_g22682_i0 PRJNA977246 23674 273 14.032787 38.30950851 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 483 7.5e-132   NTclustered gi|909719645|gb|KT185625.1| 5778 g22682 i0 100 24.2454212454212 261 0 96 0 13 273 3863 3603 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6619 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21353181 21353181 PRJNA977246_S_NODE_23457_length_275_cov_150.056911_g22465_i0 PRJNA977246 23457 275 150.056911 412.65650525 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 431 2.779999999999999e-116   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g22465 i0 94.964 40.1272727272727 278 9 100 4 1 275 3933 4208 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11035 431 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
21353254 21353254 PRJNA977246_S_NODE_25917_length_254_cov_5.706667_g24925_i0 PRJNA977246 25917 254 5.706667 14.49493418 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 457 4.18e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g24925 i0 99.6 2.44094488188976 250 1 98 0 1 250 3668 3419 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 620 457 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25495504 25495504 PRJNA977246_S_NODE_43880_length_169_cov_2.842857_g42888_i0 PRJNA977246 43880 169 2.842857 4.80442833 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.9 6.52e-6   NTclustered gi|300078498|gb|GU001160.1| 5755 g42888 i0 100 1.49112426035503 34 0 20 0 136 169 5209 5176 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 252 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;