RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA976345 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3498459 3498459 PRJNA976345_P_NODE_138723_length_171_cov_2.051471_g137115_i0 PRJNA976345 138723 171 2.051471 3.50801541 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 228 2.219999999999999e-55   NTclustered gi|226525339|gb|FJ872375.1| 156588 g137115 i0 91.071 288.701754385965 168 15 98 0 4 171 27443 27276 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 49368 228 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
3498560 3498560 PRJNA976345_P_NODE_153323_length_165_cov_1.415385_g151715_i0 PRJNA976345 153323 165 1.415385 2.33538525 Pedosphaera parvula 1032527 Bacteria Bacteria 243 7.63e-60   NTclustered gi|183579829|emb|AM905426.1| 320771 g151715 i0 94.839 13.8909090909091 155 8 94 0 1 155 1310 1464 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 2292 243 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
8601757 8601757 PRJNA976345_P_NODE_77867_length_208_cov_1.595376_g76259_i0 PRJNA976345 77867 208 1.595376 3.31838208 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 307 3.52e-79   NTclustered gi|226525288|gb|FJ872373.1| 156588 g76259 i0 93.269 247.432692307692 208 14 100 0 1 208 16032 15825 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 51466 307 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
18800103 18800103 PRJNA976345_P_NODE_26855_length_325_cov_2.379310_g25252_i0 PRJNA976345 26855 325 2.37931 7.7327575 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 412 1.2199999999999999e-110   NTclustered gi|2874254019|emb|OY970344.1| 412056 g25252 i0 89.571 244.270769230769 326 33 100 1 1 325 735850 736175 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 79388 412 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;