RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA976345 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21350592 21350592 PRJNA976345_P_NODE_45537_length_257_cov_2.738739_g43929_i0 PRJNA976345 45537 257 2.738739 7.03855923 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 159 1.3399999999999996e-34   NTclustered gi|813189934|ref|XM_012352177.1| 695850 g43929 i0 79.825 2.16731517509728 228 39 87 6 11 233 606 381 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S7 mRNA blastn 557 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
22625602 22625602 PRJNA976345_P_NODE_47118_length_254_cov_1.246575_g45510_i0 PRJNA976345 47118 254 1.246575 3.1663005 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 169 2.19e-37   NTclustered gi|675163068|ref|XM_008892171.1| 761204 g45510 i0 80 0.905511811023622 230 44 90 2 25 253 1466 1238 Phytophthora parasitica INRA-310 protoporphyrinogen oxidase partial mRNA blastn 230 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;