RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA976345 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2223118 2223118 PRJNA976345_P_NODE_124802_length_178_cov_1.559441_g123194_i0 PRJNA976345 124802 178 1.559441 2.77580498 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 56.5 0.001   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g123194 i0 100 0.168539325842697 30 0 17 0 85 114 1183389 1183360 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 30 56.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus
12427119 12427119 PRJNA976345_P_NODE_149230_length_166_cov_4.015267_g147622_i0 PRJNA976345 149230 166 4.015267 6.66534322 uncultured Candidatus Nitrosopumilus sp. 517606 Archaea Archaea 52.8 0.014   NTclustered gi|2518550870|emb|OX638319.1| 517606 g147622 i0 100 0.168674698795181 28 0 17 0 71 98 249961 249988 MAG: uncultured Candidatus Nitrosopumilus sp. isolate a9bb1b8d-3405-4f78-8bb0-675615731146 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus uncultured Candidatus Nitrosopumilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;