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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA976345 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
948214 948214 PRJNA976345_P_NODE_198501_length_150_cov_1.739130_g196893_i0 PRJNA976345 198501 150 1.73913 2.608695 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.012   NTclustered gi|351062981|emb|FO081360.1| 6239 g196893 i0 100 0.373333333333333 28 0 19 0 10 37 9058 9031 Caenorhabditis elegans Cosmid F54D11, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2223287 2223287 PRJNA976345_P_NODE_15462_length_431_cov_14.040404_g13877_i0 PRJNA976345 15462 431 14.040404 60.51414124 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 8.94e-4   NTclustered gi|687866312|emb|LK928592.1| 6239 g13877 i0 100 0.273781902552204 31 0 7 0 391 421 14295 14265 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000765 blastn 118 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2223916 2223916 PRJNA976345_P_NODE_5102_length_832_cov_28.065245_g3852_i0 PRJNA976345 5102 832 28.065245 233.5028384 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 0.002   NTclustered gi|687866312|emb|LK928592.1| 6239 g3852 i0 100 0.0745192307692308 31 0 4 0 792 822 14295 14265 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000765 blastn 62 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3498654 3498654 PRJNA976345_P_NODE_167003_length_160_cov_1.264000_g165395_i0 PRJNA976345 167003 160 1.264 2.0224 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.013   NTclustered gi|11095119|gb|AC084673.1|CBRG47I15 6238 g165395 i0 100 0.175 28 0 18 0 88 115 18027 18000 Caenorhabditis briggsae cosmid G47I15, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
4777048 4777048 PRJNA976345_P_NODE_73644_length_212_cov_2.248588_g72036_i0 PRJNA976345 73644 212 2.248588 4.76700656 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.005   NTclustered gi|7140414|gb|AC024851.1|AC024851 6239 g72036 i0 96.97 0.466981132075472 33 0 15 1 85 116 64787 64755 Caenorhabditis elegans clone Y71F9AL, complete sequence blastn 99 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6051186 6051186 PRJNA976345_P_NODE_161945_length_161_cov_4.841270_g160337_i0 PRJNA976345 161945 161 4.84127 7.7944447 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.004   NTclustered gi|412976035|emb|FO080131.2| 6239 g160337 i0 100 0.360248447204969 29 0 18 0 17 45 12704 12732 Caenorhabditis elegans Cosmid C06A8, complete sequence blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6051354 6051354 PRJNA976345_P_NODE_188365_length_153_cov_1.483051_g186757_i0 PRJNA976345 188365 153 1.483051 2.26906803 Caenorhabditis elegans 6239 Nematoda Nematoda 89.8 9.55e-14   NTclustered gi|413002462|emb|Z35663.2| 6239 g186757 i0 88.158 1.49019607843137 76 8 49 1 26 100 25137 25062 Caenorhabditis elegans Cosmid T04A8, complete sequence blastn 228 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7326293 7326293 PRJNA976345_P_NODE_35766_length_285_cov_3.076000_g34159_i0 PRJNA976345 35766 285 3.076 8.7666 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|687022658|emb|LM525572.1| 174720 g34159 i0 100 0.105263157894737 30 0 11 0 26 55 141482 141511 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000013 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
11151863 11151863 PRJNA976345_P_NODE_2689_length_1370_cov_18.085393_g1776_i0 PRJNA976345 2689 1370 18.085393 247.7698841 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 0.003   NTclustered gi|687866312|emb|LK928592.1| 6239 g1776 i0 100 0.0452554744525547 31 0 2 0 1330 1360 14295 14265 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000765 blastn 62 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12427385 12427385 PRJNA976345_P_NODE_190410_length_152_cov_2.316239_g188802_i0 PRJNA976345 190410 152 2.316239 3.52068328 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.001   NTclustered gi|687866576|emb|LK928554.1| 6239 g188802 i0 97.059 0.447368421052632 34 0 22 1 47 79 5068 5101 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000278 blastn 68 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14976732 14976732 PRJNA976345_P_NODE_78372_length_207_cov_2.488372_g76764_i0 PRJNA976345 78372 207 2.488372 5.15093004 Caenorhabditis briggsae 6238 Nematoda Nematoda 126 1.05e-24   NTclustered gi|268536275|ref|XM_002633227.1| 6238 g76764 i0 84.8 12.9130434782609 125 19 60 0 21 145 125 1 Caenorhabditis briggsae Protein CBR-LET-70 (Cbr-let-70), partial mRNA blastn 2673 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
18800750 18800750 PRJNA976345_P_NODE_96755_length_192_cov_1.796178_g95147_i0 PRJNA976345 96755 192 1.796178 3.44866176 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.017   NTclustered gi|412976748|emb|AL033514.2| 6239 g95147 i0 100 0.291666666666667 28 0 15 0 124 151 202938 202911 Caenorhabditis elegans YAC Y75B8A, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25173858 25173858 PRJNA976345_P_NODE_128560_length_176_cov_1.801418_g126952_i0 PRJNA976345 128560 176 1.801418 3.17049568 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.015   NTclustered gi|687022780|emb|LM525892.1| 174720 g126952 i0 100 0.159090909090909 28 0 16 0 107 134 16427 16400 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000266 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;