RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA976345 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3499020 3499020 PRJNA976345_P_NODE_34363_length_290_cov_2.458824_g32756_i0 PRJNA976345 34363 290 2.458824 7.1305896 Trypanosoma brucei 5691 Euglenozoa other_Eukaryota 473 4.8399999999999986e-129   NTclustered gi|62175954|gb|AC159430.1| 5691 g32756 i0 96.246 1.01034482758621 293 4 100 4 1 290 45869 46157 Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence blastn 293 473 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
4776042 4776042 PRJNA976345_P_NODE_124824_length_178_cov_1.531469_g123216_i0 PRJNA976345 124824 178 1.531469 2.72601482 Cryptoglena skujai 161229 Euglenozoa other_Eukaryota 52.8 0.015   NTclustered gi|836614630|ref|NC_027286.1| 161229 g123216 i0 100 0.157303370786517 28 0 16 0 120 147 65319 65292 Cryptoglena skujai strain SAG 10.88 chloroplast, complete genome blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Cryptoglena Cryptoglena skujai
7326739 7326739 PRJNA976345_P_NODE_84806_length_201_cov_2.939759_g83198_i0 PRJNA976345 84806 201 2.939759 5.90891559 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|1002445267|ref|XM_015804135.1| 157538 g83198 i0 100 0.43283582089552203 30 0 15 0 138 167 1531 1560 Leptomonas pyrrhocoris hypothetical protein mRNA blastn 87 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
7645239 7645239 PRJNA976345_P_NODE_198106_length_150_cov_1.973913_g196498_i0 PRJNA976345 198106 150 1.973913 2.9608695 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.1 2.03e-5   NTclustered gi|2794783799|ref|XM_067832329.1| 5663 g196498 i0 100 20.5266666666667 33 0 22 0 118 150 775 807 Leishmania enriettii uncharacterized protein (CUR178_00547), partial mRNA blastn 3079 62.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii
11151968 11151968 PRJNA976345_P_NODE_35589_length_286_cov_2.143426_g33982_i0 PRJNA976345 35589 286 2.143426 6.13019836 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 147 1.18e-30   NTclustered gi|1673156724|ref|XM_029381175.1| 5698 g33982 i0 81.868 29.6013986013986 182 26 62 6 109 286 359 181 Trypanosoma rangeli small subunit ribosomal protein S17e (TraAM80_04240), partial mRNA blastn 8466 147 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
21350140 21350140 PRJNA976345_P_NODE_180897_length_155_cov_1.933333_g179289_i0 PRJNA976345 180897 155 1.933333 2.99666615 Euglena gracilis 3039 Euglenozoa other_Eukaryota 172 9.38e-39   NTclustered gi|226347398|gb|FJ807238.1| 3039 g179289 i0 87.755 10.6645161290323 147 18 95 0 8 154 1149 1295 Euglena gracilis elongation factor 1 alpha mRNA, complete cds blastn 1653 172 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;