RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA976345 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
948330 948330 PRJNA976345_P_NODE_28501_length_316_cov_1.964413_g26897_i0 PRJNA976345 28501 316 1.964413 6.20754508 Spizellomyces punctatus 109760 Fungi Fungi 259 1.6200000000000003e-64   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g26897 i0 82.653 21.9398734177215 294 49 93 2 24 316 1684 1392 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 6933 259 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
4777068 4777068 PRJNA976345_P_NODE_75744_length_210_cov_1.908571_g74136_i0 PRJNA976345 75744 210 1.908571 4.0079991 Rhizophydium sp. JEL385 382560 Fungi Fungi 355 1.25e-93   NTclustered gi|94995412|gb|DQ485560.1| 382560 g74136 i0 97.143 98.6380952380952 210 6 100 0 1 210 237 28 Rhizophydium sp. JEL385 strain JEL-385 28S ribosomal RNA gene, partial sequence blastn 20714 355 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp. JEL385
8600778 8600778 PRJNA976345_P_NODE_145047_length_168_cov_2.338346_g143439_i0 PRJNA976345 145047 168 2.338346 3.92842128 Blyttiomyces helicus 388810 Fungi Fungi 134 4.9000000000000005e-27   NTclustered gi|2177203077|gb|OM238190.1| 388810 g143439 i0 81.287 71.7797619047619 171 26 100 4 1 168 1032 865 Blyttiomyces helicus strain Perch Fen small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12059 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces helicus
9876281 9876281 PRJNA976345_P_NODE_18688_length_390_cov_2.450704_g17093_i0 PRJNA976345 18688 390 2.450704 9.5577456 Spizellomyces punctatus 109760 Fungi Fungi 56.5 0.003   NTclustered gi|1026991975|ref|XM_016753480.1| 645134 g17093 i0 96.97 0.0846153846153846 33 1 8 0 131 163 172 140 Spizellomyces punctatus DAOM BR117 ribosomal protein L29 (SPPG_05257), mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
21350813 21350813 PRJNA976345_P_NODE_65157_length_222_cov_2.540107_g63549_i0 PRJNA976345 65157 222 2.540107 5.63903754 Synchytrium microbalum 1806994 Fungi Fungi 56.5 0.002   NTclustered gi|1759143207|ref|XM_031166982.1| 1806994 g63549 i0 100 0.765765765765766 30 0 14 0 60 89 2611 2582 Synchytrium microbalum uncharacterized protein (SmJEL517_g01054), partial mRNA blastn 170 56.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;