RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA976345 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13701643 13701643 PRJNA976345_P_NODE_159651_length_162_cov_2.582677_g158043_i0 PRJNA976345 159651 162 2.582677 4.18393674 Thermoflexus hugenholtzii 1495650 Bacteria Bacteria 104 3.67e-18   NTclustered gi|2049907263|gb|CP076326.1| 1495650 g158043 i0 92.958 0.771604938271605 71 5 44 0 89 159 2781602 2781672 MAG: Thermoflexus hugenholtzii isolate RBS10-4 chromosome, complete genome blastn 125 104 1 Bacteria   Bacillati Chloroflexota Thermoflexia Thermoflexales Thermoflexaceae Thermoflexus Thermoflexus hugenholtzii
20074494 20074494 PRJNA976345_P_NODE_148036_length_167_cov_1.787879_g146428_i0 PRJNA976345 148036 167 1.787879 2.98575793 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 52.8 0.014   NTclustered gi|2874253706|emb|OY969433.1| 1672391 g146428 i0 100 0.167664670658683 28 0 17 0 61 88 3879639 3879612 MAG: uncultured Chloroflexia bacterium isolate MFD00008.bin.1.123 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
22624651 22624651 PRJNA976345_P_NODE_102018_length_188_cov_2.529412_g100410_i0 PRJNA976345 102018 188 2.529412 4.75529456 Caldilinea aerophila 133453 Bacteria Bacteria 159 9.229999999999999e-35   NTclustered gi|381381223|dbj|AP012337.1| 926550 g100410 i0 82.967 15.0425531914894 182 25 95 5 1 179 4354833 4355011 Caldilinea aerophila DSM 14535 = NBRC 104270 DNA, complete genome blastn 2828 159 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;