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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA976345" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 24 ✖

bioproject 1

  • PRJNA976345 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
948833 948833 PRJNA976345_P_NODE_80581_length_205_cov_2.205882_g78973_i0 PRJNA976345 80581 205 2.205882 4.5220581 Chloromonas sp. ANT3 55215 Plants Plants 91.6 3.79e-14   NTclustered gi|4098851|gb|U80810.1|CSU80810 55215 g78973 i0 92.188 0.31219512195122 64 5 31 0 1 64 1281 1344 Chloromonas sp. ANT3 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (rbcS1) gene, nuclear gene encoding chloroplast protein, partial cds blastn 64 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas sp. ANT3
2542639 2542639 PRJNA976345_P_NODE_124562_length_178_cov_1.699301_g122954_i0 PRJNA976345 124562 178 1.699301 3.02475578 Prototheca 3110 Plants Plants 56.5 0.001   NTclustered gi|1381389501|ref|NC_037450.1| 1973153 g122954 i0 100 0.50561797752809 30 0 17 0 48 77 19158 19129 Prototheca zopfii strain SAG 2063 plastid, complete genome blastn 90 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca ciferrii
4776861 4776861 PRJNA976345_P_NODE_52824_length_242_cov_1.468599_g51216_i0 PRJNA976345 52824 242 1.468599 3.55400958 Rhexinema sarcinoideum 43261 Plants Plants 235 2.02e-57   NTclustered gi|1052423749|gb|KX306822.1| 43261 g51216 i0 91.716 2.09504132231405 169 14 70 0 72 240 40293 40125 Rhexinema sarcinoideum mitochondrion, complete genome blastn 507 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Helicodictyaceae Rhexinema Rhexinema sarcinoideum
6051841 6051841 PRJNA976345_P_NODE_50785_length_246_cov_1.492891_g49177_i0 PRJNA976345 50785 246 1.492891 3.67251186 Ulva prolifera 3117 Plants Plants 60.2 1.33e-4   NTclustered gi|1915399091|gb|MN867382.1| 3117 g49177 i0 92.683 0.166666666666667 41 3 17 0 199 239 575 535 Ulva prolifera light-harvesting complex I protein (lhca-9) mRNA, partial cds blastn 41 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
6051868 6051868 PRJNA976345_P_NODE_52865_length_242_cov_1.304348_g51257_i0 PRJNA976345 52865 242 1.304348 3.15652216 Ulothrix zonata 43941 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|1616636|emb|Z47999.1| 43941 g51257 i0 100 100.00826446281 242 0 100 0 1 242 864 623 U.zonata 5.8S, 18S and 26S rRNA genes blastn 24202 448 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata
6051971 6051971 PRJNA976345_P_NODE_6385_length_718_cov_30.857980_g5033_i0 PRJNA976345 6385 718 30.85798 221.5602964 Sarcinofilum mucosum 141643 Plants Plants 1125 0   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g5033 i0 95.72 100.370473537604 701 26 97 4 1 698 146592 145893 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 72066 1125 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
11151421 11151421 PRJNA976345_P_NODE_141149_length_170_cov_1.837037_g139541_i0 PRJNA976345 141149 170 1.837037 3.1229629 Volvox carteri 3067 Plants Plants 58.4 3.06e-4   NTclustered gi|261888139|gb|GU084820.1| 3068 g139541 i0 100 0.358823529411765 31 0 18 0 64 94 188781 188751 Volvox carteri f. nagariensis strain UTEX 2908 plastid, partial genome blastn 61 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
12427092 12427092 PRJNA976345_P_NODE_145750_length_168_cov_1.721805_g144142_i0 PRJNA976345 145750 168 1.721805 2.8926324 Chlorococcum sp. NEPCC478 445598 Plants Plants 145 2.26e-30   NTclustered gi|148524156|gb|EF551323.1| 445598 g144142 i0 92.929 1.80357142857143 99 7 59 0 70 168 1340 1242 Chlorococcum sp. NEPCC478 elongation factor-1 alpha-like protein mRNA, partial cds blastn 303 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorococcaceae Chlorococcum Chlorococcum sp. NEPCC478
13702635 13702635 PRJNA976345_P_NODE_92091_length_195_cov_3.168750_g90483_i0 PRJNA976345 92091 195 3.16875 6.1790625 Sarcinofilum mucosum 141643 Plants Plants 298 1.96e-76   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g90483 i0 94.359 106.953846153846 195 10 100 1 1 195 143140 143333 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 20856 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
16250535 16250535 PRJNA976345_P_NODE_112093_length_182_cov_1.863946_g110485_i0 PRJNA976345 112093 182 1.863946 3.39238172 Chlamydomonas reinhardtii 3055 Plants Plants 246 6.619999999999999e-61   NTclustered gi|2082237163|ref|XM_043058766.1| 3055 g110485 i0 92 54.7582417582418 175 14 96 0 2 176 432 606 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g039250v5), mRNA blastn 9966 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16251669 16251669 PRJNA976345_P_NODE_73333_length_212_cov_18.909605_g71725_i0 PRJNA976345 73333 212 18.909605 40.0883626 Sarcinofilum mucosum 141643 Plants Plants 322 1.29e-83   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g71725 i0 97.849 117.919811320755 186 4 88 0 27 212 147901 147716 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 24999 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
16569702 16569702 PRJNA976345_P_NODE_19313_length_384_cov_1.481375_g17718_i0 PRJNA976345 19313 384 1.481375 5.68848 Monostromataceae 153902 Plants Plants 418 3.1399999999999996e-112   NTclustered gi|2473930236|ref|NC_072926.1| 138667 g17718 i0 87.637 3.59375 364 39 94 6 10 369 87346 86985 Monostroma nitidum mitochondrion, complete genome blastn 1380 418 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Monostromataceae Monostroma Monostroma nitidum
20074492 20074492 PRJNA976345_P_NODE_147676_length_167_cov_2.098485_g146068_i0 PRJNA976345 147676 167 2.098485 3.50446995 Ulothrix zonata 43941 Plants Plants 292 7.58e-75   NTclustered gi|530445648|emb|HE860527.1| 43941 g146068 i0 100 3.8562874251497 158 0 95 0 10 167 583 426 Ulothrix zonata partial 28S rRNA gene, isolate N94 blastn 644 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Ulothrix Ulothrix zonata
20075149 20075149 PRJNA976345_P_NODE_45776_length_257_cov_1.486486_g44168_i0 PRJNA976345 45776 257 1.486486 3.82026902 Dichotomosiphon tuberosus 118263 Plants Plants 56.5 0.002   NTclustered gi|1482674794|gb|MH591081.1| 118263 g44168 i0 97.059 0.459143968871595 34 0 13 1 183 216 5833 5801 Dichotomosiphon tuberosus chloroplast blastn 118 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Dichotomosiphonaceae Dichotomosiphon Dichotomosiphon tuberosus
20075274 20075274 PRJNA976345_P_NODE_5896_length_754_cov_18.043115_g4584_i0 PRJNA976345 5896 754 18.043115 136.0450871 Desmochloris halophila 138176 Plants Plants 1219 0   NTclustered gi|371782086|emb|HE610118.1| 138176 g4584 i0 96.482 98.2148541114058 739 24 98 2 17 754 2871 2134 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 74054 1219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
21350347 21350347 PRJNA976345_P_NODE_25737_length_332_cov_1.757576_g24134_i0 PRJNA976345 25737 332 1.757576 5.83515232 Microglena monadina 47904 Plants Plants 230 1.3499999999999995e-55   NTclustered gi|952953029|gb|KT624798.1| 47904 g24134 i0 93.548 36.078313253012 155 8 47 2 178 332 587 739 Microglena monadina clone contig-67 chloroplast, partial genome blastn 11978 230 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Microglena Microglena monadina
21351011 21351011 PRJNA976345_P_NODE_89677_length_197_cov_2.666667_g88069_i0 PRJNA976345 89677 197 2.666667 5.25333399 Rhexinema sarcinoideum 43261 Plants Plants 150 5.88e-32   NTclustered gi|1052423749|gb|KX306822.1| 43261 g88069 i0 98.81 2.64467005076142 84 1 43 0 82 165 39123 39206 Rhexinema sarcinoideum mitochondrion, complete genome blastn 521 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Helicodictyaceae Rhexinema Rhexinema sarcinoideum
22625160 22625160 PRJNA976345_P_NODE_18258_length_395_cov_1.430556_g16664_i0 PRJNA976345 18258 395 1.430556 5.6506962 Chlamydomonas sp. W80 103365 Plants Plants 150 1.3e-31   NTclustered gi|563316896|dbj|AB859223.1| 103365 g16664 i0 78.541 2.53924050632911 233 46 58 4 163 393 1135 905 Chlamydomonas sp. W80 mRNA for fructose-bisphosphate aldolase, class I, complete cds blastn 1003 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. W80
22625446 22625446 PRJNA976345_P_NODE_33738_length_293_cov_1.527132_g32131_i0 PRJNA976345 33738 293 1.527132 4.47449676 Coccomyxa subellipsoidea 248742 Plants Plants 191 5.52e-44   NTclustered gi|545359983|ref|XM_005645351.1| 574566 g32131 i0 81.277 8.98293515358362 235 44 80 0 4 238 417 651 Coccomyxa subellipsoidea C-169 putative 40S ribosomal protein S3 partial mRNA blastn 2632 191 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
23900282 23900282 PRJNA976345_P_NODE_129599_length_175_cov_4.442857_g127991_i0 PRJNA976345 129599 175 4.442857 7.77499975 Desmochloris halophila 138176 Plants Plants 307 2.8500000000000004e-79   NTclustered gi|371782086|emb|HE610118.1| 138176 g127991 i0 98.286 100 175 3 100 0 1 175 2121 1947 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17500 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
23900299 23900299 PRJNA976345_P_NODE_132559_length_174_cov_1.848921_g130951_i0 PRJNA976345 132559 174 1.848921 3.21712254 Tupiella akineta 160070 Plants Plants 174 2.99e-39   NTclustered gi|49147156|ref|NC_005926.1| 160070 g130951 i0 93.22 6.63218390804598 118 8 68 0 57 174 2461 2344 Pseudendoclonium akinetum mitochondrion, complete genome blastn 1154 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Tupiellaceae Tupiella Tupiella akineta
23900812 23900812 PRJNA976345_P_NODE_23159_length_349_cov_4.700637_g21558_i0 PRJNA976345 23159 349 4.700637 16.40522313 Ulva prolifera 3117 Plants Plants 241 6.55e-59   NTclustered gi|1915399065|gb|MN867369.1| 3117 g21558 i0 87.923 59.2922636103152 207 22 58 2 1 204 565 771 Ulva prolifera light-harvesting complex II protein (lhcbm-2) mRNA, partial cds blastn 20693 241 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva prolifera
25173980 25173980 PRJNA976345_P_NODE_14520_length_445_cov_25.239024_g12939_i0 PRJNA976345 14520 445 25.239024 112.3136568 Nannochloris normandinae 926285 Plants Plants 586 9.55e-163   NTclustered gi|922575245|gb|JQ921007.1| 926285 g12939 i0 90.562 109.573033707865 445 39 100 3 1 445 842 1283 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 48760 586 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
25174074 25174074 PRJNA976345_P_NODE_161780_length_162_cov_0.944882_g160172_i0 PRJNA976345 161780 162 0.944882 1.53070884 Trebouxia aggregata 160068 Plants Plants 80.5 6.18e-11   NTclustered gi|162134283|gb|EU123964.1| 160068 g160172 i0 91.667 6.24691358024691 60 1 40 3 16 73 2170 2227 Trebouxia aggregata strain SAG 219-1d CP47 chlorophyll apoprotein of photosystem II (psbB), putative site-specific DNA endonuclease (orf294), T protein of photosystem II (psbT), N protein of photosystem II (psbN), 10 KDa phosphoprotein of photosystem II (psbH), proteolytic subunit 2 of clp protease (clpP), and Z protein of photosystem II (psbZ) genes, complete cds; chloroplast blastn 1012 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;