RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA975724 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5095128 5095128 PRJNA975724_S_NODE_5064_length_521_cov_2.537946_g4885_i0 PRJNA975724 5064 521 2.537946 13.22269866 Pseudomonadati 3379134 Bacteria Bacteria 669 0   NTclustered gi|2874254096|emb|OY970179.1| 412056 g4885 i0 91.111 118.268714011516 495 43 95 1 27 520 1728837 1728343 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 61618 669 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9874489 9874489 PRJNA975724_S_NODE_47828_length_302_cov_1.008734_g47647_i0 PRJNA975724 47828 302 1.008734 3.04637668 Horticoccus luteus 2862869 Bacteria Bacteria 73.1 2.16e-8   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g47647 i0 92.157 0.311258278145695 51 4 17 0 15 65 1994866 1994916 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 94 73.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
21349190 21349190 PRJNA975724_S_NODE_77_length_1765_cov_69.332151_g69_i0 PRJNA975724 77 1765 69.332151 1223.71246515 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 2403 0   NTclustered gi|2874254096|emb|OY970179.1| 412056 g69 i0 91.487 181.873654390935 1762 128 99 17 3 1756 1728992 1727245 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 321007 2403 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;