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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA975724" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA975724 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
946365 946365 PRJNA975724_S_NODE_49061_length_299_cov_1.703540_g48880_i0 PRJNA975724 49061 299 1.70354 5.0935846 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.028   NTclustered gi|1557394408|emb|LR031564.1| 45931 g48880 i0 100 0.0936454849498328 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
1266769 1266769 PRJNA975724_S_NODE_33681_length_336_cov_6.475285_g33500_i0 PRJNA975724 33681 336 6.475285 21.7569576 Metazoa 33208 Nematoda Nematoda 176 1.8e-39   NTclustered gi|288904190|ref|NC_013848.1| 237660 g33500 i0 78.114 82.2648809523809 297 51 86 12 9 298 13853 13564 Mecistocirrus digitatus mitochondrion, complete genome blastn 27641 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Mecistocirrus Mecistocirrus digitatus
3497743 3497743 PRJNA975724_S_NODE_78423_length_251_cov_1.168539_g78242_i0 PRJNA975724 78423 251 1.168539 2.93303289 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g78242 i0 100 0.111553784860558 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4774199 4774199 PRJNA975724_S_NODE_31064_length_344_cov_4.645756_g30883_i0 PRJNA975724 31064 344 4.645756 15.98140064 Pratylenchus vulnus 45931 Nematoda Nematoda 58.4 6.99e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g30883 i0 92.5 0.116279069767442 40 3 12 0 1 40 23 62 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 40 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
6049005 6049005 PRJNA975724_S_NODE_28705_length_352_cov_2.422939_g28524_i0 PRJNA975724 28705 352 2.422939 8.52874528 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.033   NTclustered gi|1557394408|emb|LR031564.1| 45931 g28524 i0 100 0.0795454545454545 28 0 8 0 325 352 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12425205 12425205 PRJNA975724_S_NODE_36390_length_329_cov_1.609375_g36209_i0 PRJNA975724 36390 329 1.609375 5.29484375 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36209 i0 97.059 0.103343465045593 34 0 10 1 296 329 51 19 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13701172 13701172 PRJNA975724_S_NODE_9211_length_458_cov_3.335065_g9030_i0 PRJNA975724 9211 458 3.335065 15.2745977 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.044   NTclustered gi|1557394408|emb|LR031564.1| 45931 g9030 i0 100 0.0611353711790393 28 0 6 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14973419 14973419 PRJNA975724_S_NODE_16912_length_402_cov_1.571429_g16731_i0 PRJNA975724 16912 402 1.571429 6.31714458 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.011   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16731 i0 100 0.0721393034825871 29 0 7 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14974890 14974890 PRJNA975724_S_NODE_73252_length_258_cov_1.248649_g73071_i0 PRJNA975724 73252 258 1.248649 3.22151442 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g73071 i0 100 0.108527131782946 28 0 11 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14975270 14975270 PRJNA975724_S_NODE_87532_length_244_cov_0.900585_g87351_i0 PRJNA975724 87532 244 0.900585 2.1974274 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g87351 i0 100 0.114754098360656 28 0 11 0 217 244 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18797260 18797260 PRJNA975724_S_NODE_13195_length_425_cov_1.312500_g13014_i0 PRJNA975724 13195 425 1.3125 5.578125 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.011   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13014 i0 100 0.0682352941176471 29 0 7 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20073404 20073404 PRJNA975724_S_NODE_64456_length_271_cov_1.904040_g64275_i0 PRJNA975724 64456 271 1.90404 5.1599484 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.025   NTclustered gi|1557394408|emb|LR031564.1| 45931 g64275 i0 100 0.103321033210332 28 0 10 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21348568 21348568 PRJNA975724_S_NODE_54417_length_289_cov_1.069444_g54236_i0 PRJNA975724 54417 289 1.069444 3.09069316 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.027   NTclustered gi|1557394408|emb|LR031564.1| 45931 g54236 i0 100 0.0968858131487889 28 0 10 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25173664 25173664 PRJNA975724_S_NODE_94660_length_197_cov_4.411290_g94479_i0 PRJNA975724 94660 197 4.41129 8.6902413 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g94479 i0 100 0.142131979695431 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;